Hb_000957_040

Information

Type -
Description -
Location Contig957: 163160-164458
Sequence    

Annotation

kegg
ID rcu:RCOM_1443450
description zinc finger protein, putative
nr
ID XP_012067431.1
description PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
swissprot
ID P0CE10
description Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=3 SV=1
trembl
ID A0A067LCT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26932 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase rnf217

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63567: 163219-164556
cDNA
(Sanger)
(ID:Location)		 004_D20.ab1: 163293-164226 , 045_C17.ab1: 163317-164222

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000957_040 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
2 Hb_000762_020 0.0678174313 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
3 Hb_001140_160 0.0759797198 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
4 Hb_012347_010 0.0764853831 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
5 Hb_000130_390 0.0869397754 - - PREDICTED: glutamate receptor 2.8-like [Pyrus x bretschneideri]
6 Hb_010872_060 0.0949417196 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
7 Hb_002027_300 0.100277819 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
8 Hb_124315_040 0.1016862501 - - hypothetical protein 19 [Hevea brasiliensis]
9 Hb_003018_180 0.110195834 - - PREDICTED: WEB family protein At3g51220-like [Jatropha curcas]
10 Hb_001631_070 0.1157458666 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_006120_200 0.1207476137 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
12 Hb_001141_470 0.1232926715 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
13 Hb_055335_010 0.1252276482 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
14 Hb_001315_020 0.1270255705 - - ring finger protein, putative [Ricinus communis]
15 Hb_003540_230 0.1271934494 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
16 Hb_012799_060 0.1291535206 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
17 Hb_008847_010 0.1300737095 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_000184_040 0.1321555874 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like isoform X2 [Nelumbo nucifera]
19 Hb_005455_070 0.1329348979 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
20 Hb_001017_090 0.1331505231 - - -

Gene co-expression network

sample Hb_000957_040 Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_000957_040--Hb_000762_020 Hb_001140_160 Hb_001140_160 Hb_000957_040--Hb_001140_160 Hb_012347_010 Hb_012347_010 Hb_000957_040--Hb_012347_010 Hb_000130_390 Hb_000130_390 Hb_000957_040--Hb_000130_390 Hb_010872_060 Hb_010872_060 Hb_000957_040--Hb_010872_060 Hb_002027_300 Hb_002027_300 Hb_000957_040--Hb_002027_300 Hb_000762_020--Hb_001140_160 Hb_000184_040 Hb_000184_040 Hb_000762_020--Hb_000184_040 Hb_006120_200 Hb_006120_200 Hb_000762_020--Hb_006120_200 Hb_000762_020--Hb_012347_010 Hb_001017_090 Hb_001017_090 Hb_000762_020--Hb_001017_090 Hb_004738_090 Hb_004738_090 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_010872_060 Hb_124315_040 Hb_124315_040 Hb_012347_010--Hb_124315_040 Hb_012347_010--Hb_000130_390 Hb_000130_390--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_000130_390--Hb_002298_040 Hb_000130_390--Hb_001140_160 Hb_005016_130 Hb_005016_130 Hb_000130_390--Hb_005016_130 Hb_010872_060--Hb_001140_160 Hb_001631_070 Hb_001631_070 Hb_010872_060--Hb_001631_070 Hb_010872_060--Hb_124315_040 Hb_012799_060 Hb_012799_060 Hb_010872_060--Hb_012799_060 Hb_001315_020 Hb_001315_020 Hb_002027_300--Hb_001315_020 Hb_002027_300--Hb_001140_160 Hb_002027_300--Hb_006120_200 Hb_002027_300--Hb_010872_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.798 4.68995 2.14939 11.8091 49.1607 62.0725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.149 51.098 82.3351 11.1813 3.27359

CAGE analysis