Hb_000958_010

Information

Type -
Description -
Location Contig958: 823-2145
Sequence    

Annotation

kegg
ID rcu:RCOM_1031050
description hypothetical protein
nr
ID XP_002513763.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C7J9
description F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1
trembl
ID B9RJ44
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008453_020 0.1084781964 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
3 Hb_001514_200 0.1181530282 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
4 Hb_004032_240 0.1216001341 - - electron transporter, putative [Ricinus communis]
5 Hb_000117_040 0.1226779897 - - 30S ribosomal protein S6A [Hevea brasiliensis]
6 Hb_011609_190 0.1299698998 - - 14-3-3 protein 2 [Hevea brasiliensis]
7 Hb_002200_110 0.1313431895 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001433_170 0.1328413212 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
9 Hb_027556_010 0.1345348125 - - -
10 Hb_186982_030 0.1359654538 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000371_110 0.1398217423 - - -
12 Hb_012654_020 0.1404822297 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009662_030 0.1412342215 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
14 Hb_030620_010 0.1415270716 - - -
15 Hb_000771_140 0.1416395583 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
16 Hb_017134_040 0.1418354472 - - hypothetical protein AALP_AA3G042000 [Arabis alpina]
17 Hb_001158_030 0.1428130974 - - -
18 Hb_011716_040 0.143287901 - - -
19 Hb_000733_060 0.1437696216 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
20 Hb_000014_100 0.1441197544 - - -

Gene co-expression network

sample Hb_000958_010 Hb_000958_010 Hb_008453_020 Hb_008453_020 Hb_000958_010--Hb_008453_020 Hb_001514_200 Hb_001514_200 Hb_000958_010--Hb_001514_200 Hb_004032_240 Hb_004032_240 Hb_000958_010--Hb_004032_240 Hb_000117_040 Hb_000117_040 Hb_000958_010--Hb_000117_040 Hb_011609_190 Hb_011609_190 Hb_000958_010--Hb_011609_190 Hb_002200_110 Hb_002200_110 Hb_000958_010--Hb_002200_110 Hb_001198_090 Hb_001198_090 Hb_008453_020--Hb_001198_090 Hb_005015_010 Hb_005015_010 Hb_008453_020--Hb_005015_010 Hb_030620_010 Hb_030620_010 Hb_008453_020--Hb_030620_010 Hb_008453_020--Hb_000117_040 Hb_000733_060 Hb_000733_060 Hb_008453_020--Hb_000733_060 Hb_000847_070 Hb_000847_070 Hb_001514_200--Hb_000847_070 Hb_004096_170 Hb_004096_170 Hb_001514_200--Hb_004096_170 Hb_000284_200 Hb_000284_200 Hb_001514_200--Hb_000284_200 Hb_002377_050 Hb_002377_050 Hb_001514_200--Hb_002377_050 Hb_003605_070 Hb_003605_070 Hb_001514_200--Hb_003605_070 Hb_002681_140 Hb_002681_140 Hb_001514_200--Hb_002681_140 Hb_010931_110 Hb_010931_110 Hb_004032_240--Hb_010931_110 Hb_003893_170 Hb_003893_170 Hb_004032_240--Hb_003893_170 Hb_004032_240--Hb_008453_020 Hb_019153_040 Hb_019153_040 Hb_004032_240--Hb_019153_040 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030 Hb_000117_040--Hb_011609_190 Hb_000163_290 Hb_000163_290 Hb_000117_040--Hb_000163_290 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000371_110 Hb_000371_110 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000179_250 Hb_000179_250 Hb_000117_040--Hb_000179_250 Hb_011609_190--Hb_000179_250 Hb_012654_020 Hb_012654_020 Hb_011609_190--Hb_012654_020 Hb_001433_170 Hb_001433_170 Hb_011609_190--Hb_001433_170 Hb_002172_030 Hb_002172_030 Hb_011609_190--Hb_002172_030 Hb_000491_080 Hb_000491_080 Hb_011609_190--Hb_000491_080 Hb_017134_040 Hb_017134_040 Hb_002200_110--Hb_017134_040 Hb_009510_030 Hb_009510_030 Hb_002200_110--Hb_009510_030 Hb_000057_060 Hb_000057_060 Hb_002200_110--Hb_000057_060 Hb_003404_030 Hb_003404_030 Hb_002200_110--Hb_003404_030 Hb_001115_050 Hb_001115_050 Hb_002200_110--Hb_001115_050 Hb_003786_110 Hb_003786_110 Hb_002200_110--Hb_003786_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.1879 4.05547 0.515787 0.932584 42.992 20.0066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.1346 21.2078 16.5748 7.22014 1.38028

CAGE analysis