Hb_000958_030

Information

Type -
Description -
Location Contig958: 10235-18499
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28910g
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID -
description -
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_030 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_006588_030 0.154894326 - - PREDICTED: cytochrome P450 CYP72A219-like [Jatropha curcas]
3 Hb_002072_020 0.1653995304 - - hypothetical protein JCGZ_16057 [Jatropha curcas]
4 Hb_000077_330 0.2047643567 - - PREDICTED: bifunctional epoxide hydrolase 2-like [Jatropha curcas]
5 Hb_000976_440 0.2068477156 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_018591_050 0.2285610814 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
7 Hb_032050_050 0.2288620237 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
8 Hb_009823_010 0.2307924846 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
9 Hb_000025_020 0.2325134245 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
10 Hb_048476_010 0.2411704184 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
11 Hb_000003_510 0.2412756579 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
12 Hb_019893_010 0.2452353029 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
13 Hb_001640_020 0.2454299863 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
14 Hb_007416_150 0.2462004892 - - sarcosine oxidase, putative [Ricinus communis]
15 Hb_022250_120 0.2485970495 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
16 Hb_003576_050 0.2528749597 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
17 Hb_000556_110 0.2535013547 - - hypothetical protein POPTR_0014s06790g [Populus trichocarpa]
18 Hb_002477_220 0.2552142482 - - hypothetical protein POPTR_0017s06650g [Populus trichocarpa]
19 Hb_000083_130 0.2562003746 - - hypothetical protein RCOM_0884570 [Ricinus communis]
20 Hb_000315_030 0.2566581159 - - carbohydrate binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000958_030 Hb_000958_030 Hb_006588_030 Hb_006588_030 Hb_000958_030--Hb_006588_030 Hb_002072_020 Hb_002072_020 Hb_000958_030--Hb_002072_020 Hb_000077_330 Hb_000077_330 Hb_000958_030--Hb_000077_330 Hb_000976_440 Hb_000976_440 Hb_000958_030--Hb_000976_440 Hb_018591_050 Hb_018591_050 Hb_000958_030--Hb_018591_050 Hb_032050_050 Hb_032050_050 Hb_000958_030--Hb_032050_050 Hb_006588_030--Hb_002072_020 Hb_157263_010 Hb_157263_010 Hb_006588_030--Hb_157263_010 Hb_048476_010 Hb_048476_010 Hb_006588_030--Hb_048476_010 Hb_000003_510 Hb_000003_510 Hb_006588_030--Hb_000003_510 Hb_000083_130 Hb_000083_130 Hb_006588_030--Hb_000083_130 Hb_002072_020--Hb_000003_510 Hb_002072_020--Hb_000976_440 Hb_002072_020--Hb_048476_010 Hb_002072_020--Hb_032050_050 Hb_002072_020--Hb_000077_330 Hb_009823_010 Hb_009823_010 Hb_002072_020--Hb_009823_010 Hb_000077_330--Hb_018591_050 Hb_000077_330--Hb_032050_050 Hb_008692_010 Hb_008692_010 Hb_000077_330--Hb_008692_010 Hb_001649_040 Hb_001649_040 Hb_000077_330--Hb_001649_040 Hb_031042_030 Hb_031042_030 Hb_000077_330--Hb_031042_030 Hb_012553_020 Hb_012553_020 Hb_000077_330--Hb_012553_020 Hb_000976_440--Hb_009823_010 Hb_001408_050 Hb_001408_050 Hb_000976_440--Hb_001408_050 Hb_000762_070 Hb_000762_070 Hb_000976_440--Hb_000762_070 Hb_003576_050 Hb_003576_050 Hb_000976_440--Hb_003576_050 Hb_001678_030 Hb_001678_030 Hb_000976_440--Hb_001678_030 Hb_018591_050--Hb_008692_010 Hb_025526_010 Hb_025526_010 Hb_018591_050--Hb_025526_010 Hb_007894_260 Hb_007894_260 Hb_018591_050--Hb_007894_260 Hb_000412_060 Hb_000412_060 Hb_018591_050--Hb_000412_060 Hb_003060_080 Hb_003060_080 Hb_018591_050--Hb_003060_080 Hb_000984_080 Hb_000984_080 Hb_032050_050--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_032050_050--Hb_002110_270 Hb_002150_010 Hb_002150_010 Hb_032050_050--Hb_002150_010 Hb_002900_070 Hb_002900_070 Hb_032050_050--Hb_002900_070 Hb_006006_070 Hb_006006_070 Hb_032050_050--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_032050_050--Hb_076895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.314697 0.488589 0.0978605 0.24862 0.0805341 0.126278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.8909 0.151568

CAGE analysis