Hb_000958_040

Information

Type -
Description -
Location Contig958: 20248-26959
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27120g
description POPTRDRAFT_706393; DNA topoisomerase family protein
nr
ID XP_012065591.1
description PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
swissprot
ID O24308
description DNA topoisomerase 2 OS=Pisum sativum GN=TOP2 PE=2 SV=1
trembl
ID A0A067LG15
description DNA topoisomerase 2 OS=Jatropha curcas GN=JCGZ_16782 PE=3 SV=1
Gene Ontology
ID GO:0005634
description dna topoisomerase 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63575: 20157-22244 , PASA_asmbl_63576: 22262-22564 , PASA_asmbl_63577: 23888-24670 , PASA_asmbl_63578: 25907-26775
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_040 0.0 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
2 Hb_000954_040 0.1274100624 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
3 Hb_007163_030 0.130791909 - - hypothetical protein RCOM_0187400 [Ricinus communis]
4 Hb_011861_040 0.1385126904 - - PREDICTED: pheromone-processing carboxypeptidase KEX1-like [Jatropha curcas]
5 Hb_001328_070 0.1393350383 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Jatropha curcas]
6 Hb_001366_380 0.1397963742 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
7 Hb_077562_020 0.1463968927 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
8 Hb_000260_670 0.1525299447 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
9 Hb_006316_090 0.157514549 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_000552_030 0.1597073308 - - glucose-6-phosphate 1-dehydrogenase, putative [Ricinus communis]
11 Hb_001649_050 0.1612090387 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
12 Hb_001369_550 0.1686639656 - - 21 kDa protein precursor, putative [Ricinus communis]
13 Hb_093458_020 0.1693357445 desease resistance Gene Name: AAA PREDICTED: chromosome transmission fidelity protein 18 homolog [Jatropha curcas]
14 Hb_000272_010 0.1704087632 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
15 Hb_004316_080 0.172507203 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
16 Hb_173764_010 0.1727712435 - - protein binding protein, putative [Ricinus communis]
17 Hb_000128_050 0.1743737845 - - conserved hypothetical protein [Ricinus communis]
18 Hb_036182_010 0.1767330311 - - hypothetical protein POPTR_0473s00220g [Populus trichocarpa]
19 Hb_011512_010 0.1771202096 - - glutathione s-transferase, putative [Ricinus communis]
20 Hb_006152_040 0.1773793172 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105645062 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000958_040 Hb_000958_040 Hb_000954_040 Hb_000954_040 Hb_000958_040--Hb_000954_040 Hb_007163_030 Hb_007163_030 Hb_000958_040--Hb_007163_030 Hb_011861_040 Hb_011861_040 Hb_000958_040--Hb_011861_040 Hb_001328_070 Hb_001328_070 Hb_000958_040--Hb_001328_070 Hb_001366_380 Hb_001366_380 Hb_000958_040--Hb_001366_380 Hb_077562_020 Hb_077562_020 Hb_000958_040--Hb_077562_020 Hb_000260_670 Hb_000260_670 Hb_000954_040--Hb_000260_670 Hb_000954_040--Hb_011861_040 Hb_001369_550 Hb_001369_550 Hb_000954_040--Hb_001369_550 Hb_080147_070 Hb_080147_070 Hb_000954_040--Hb_080147_070 Hb_002700_030 Hb_002700_030 Hb_000954_040--Hb_002700_030 Hb_001999_160 Hb_001999_160 Hb_000954_040--Hb_001999_160 Hb_007163_030--Hb_001328_070 Hb_001934_040 Hb_001934_040 Hb_007163_030--Hb_001934_040 Hb_007163_030--Hb_011861_040 Hb_001649_050 Hb_001649_050 Hb_007163_030--Hb_001649_050 Hb_000334_120 Hb_000334_120 Hb_007163_030--Hb_000334_120 Hb_002871_130 Hb_002871_130 Hb_011861_040--Hb_002871_130 Hb_011861_040--Hb_000260_670 Hb_011861_040--Hb_001649_050 Hb_003360_010 Hb_003360_010 Hb_011861_040--Hb_003360_010 Hb_011861_040--Hb_080147_070 Hb_001328_070--Hb_011861_040 Hb_093458_020 Hb_093458_020 Hb_001328_070--Hb_093458_020 Hb_000003_060 Hb_000003_060 Hb_001328_070--Hb_000003_060 Hb_000365_210 Hb_000365_210 Hb_001328_070--Hb_000365_210 Hb_000272_010 Hb_000272_010 Hb_001366_380--Hb_000272_010 Hb_001366_380--Hb_000260_670 Hb_006316_090 Hb_006316_090 Hb_001366_380--Hb_006316_090 Hb_005306_030 Hb_005306_030 Hb_001366_380--Hb_005306_030 Hb_001366_380--Hb_001649_050 Hb_001076_010 Hb_001076_010 Hb_001366_380--Hb_001076_010 Hb_077562_020--Hb_001366_380 Hb_077562_020--Hb_000260_670 Hb_077562_020--Hb_000272_010 Hb_005183_150 Hb_005183_150 Hb_077562_020--Hb_005183_150 Hb_077562_020--Hb_000954_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.109755 0.34688 13.912 4.33691 0.0310219 0.0403081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.46123 0.232308 0.335214 5.95123 0.872869

CAGE analysis