Hb_000958_050

Information

Type -
Description -
Location Contig958: 28109-33391
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06390g
description POPTRDRAFT_1087856; hypothetical protein
nr
ID KDP43494.1
description hypothetical protein JCGZ_16781 [Jatropha curcas]
swissprot
ID Q84TI3
description Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2
trembl
ID A0A067LH22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16781 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein oberon 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63579: 28155-33604 , PASA_asmbl_63580: 29420-29838
cDNA
(Sanger)
(ID:Location)		 011_O16.ab1: 32025-32303

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_050 0.0 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
2 Hb_005701_050 0.0545307179 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
3 Hb_000003_410 0.0557593507 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
4 Hb_000934_210 0.0590682127 - - suppressor of ty, putative [Ricinus communis]
5 Hb_000645_130 0.0593134251 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
6 Hb_002007_110 0.0604109542 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
7 Hb_012055_110 0.060537035 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
8 Hb_011689_030 0.0630073839 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
9 Hb_000665_230 0.0645787432 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
10 Hb_004659_090 0.0660336353 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
11 Hb_001008_070 0.0665453747 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
12 Hb_003939_060 0.0671696903 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000059_230 0.0674731438 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
14 Hb_001133_030 0.0680551209 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
15 Hb_003929_210 0.0690629783 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
16 Hb_000579_010 0.0693589403 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
17 Hb_012244_020 0.0698703302 - - calpain, putative [Ricinus communis]
18 Hb_001648_020 0.0703394749 - - hypothetical protein POPTR_0007s07750g [Populus trichocarpa]
19 Hb_005408_030 0.0738612711 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
20 Hb_000358_220 0.0742536152 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000958_050 Hb_000958_050 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_000645_130 Hb_000645_130 Hb_000958_050--Hb_000645_130 Hb_002007_110 Hb_002007_110 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110 Hb_000664_120 Hb_000664_120 Hb_005701_050--Hb_000664_120 Hb_005701_050--Hb_012055_110 Hb_000996_020 Hb_000996_020 Hb_005701_050--Hb_000996_020 Hb_005701_050--Hb_000934_210 Hb_000206_160 Hb_000206_160 Hb_005701_050--Hb_000206_160 Hb_001133_030 Hb_001133_030 Hb_000003_410--Hb_001133_030 Hb_000003_410--Hb_000934_210 Hb_003216_090 Hb_003216_090 Hb_000003_410--Hb_003216_090 Hb_021596_010 Hb_021596_010 Hb_000003_410--Hb_021596_010 Hb_000009_410 Hb_000009_410 Hb_000003_410--Hb_000009_410 Hb_027472_220 Hb_027472_220 Hb_000934_210--Hb_027472_220 Hb_012244_020 Hb_012244_020 Hb_000934_210--Hb_012244_020 Hb_123531_010 Hb_123531_010 Hb_000934_210--Hb_123531_010 Hb_000934_210--Hb_002007_110 Hb_002357_070 Hb_002357_070 Hb_000934_210--Hb_002357_070 Hb_009302_030 Hb_009302_030 Hb_000645_130--Hb_009302_030 Hb_004659_090 Hb_004659_090 Hb_000645_130--Hb_004659_090 Hb_003939_060 Hb_003939_060 Hb_000645_130--Hb_003939_060 Hb_000500_300 Hb_000500_300 Hb_000645_130--Hb_000500_300 Hb_000806_030 Hb_000806_030 Hb_000645_130--Hb_000806_030 Hb_002007_110--Hb_012055_110 Hb_002007_110--Hb_123531_010 Hb_005832_010 Hb_005832_010 Hb_002007_110--Hb_005832_010 Hb_000331_580 Hb_000331_580 Hb_002007_110--Hb_000331_580 Hb_000066_150 Hb_000066_150 Hb_002007_110--Hb_000066_150 Hb_006031_010 Hb_006031_010 Hb_002007_110--Hb_006031_010 Hb_012055_110--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_012055_110--Hb_000879_040 Hb_012055_110--Hb_002357_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.998 34.2133 22.6053 17.4563 18.264 17.6868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.34948 9.15901 15.6958 23.1132 34.6352

CAGE analysis