Hb_000958_060

Information

Type -
Description -
Location Contig958: 37950-38162
Sequence    

Annotation

kegg
ID rcu:RCOM_0967470
description hypothetical protein
nr
ID XP_002517807.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVN8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0967470 PE=4 SV=1
Gene Ontology
ID GO:0006661
description rna rnp complex-1-interacting

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008221_190 0.105463029 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 [Jatropha curcas]
3 Hb_007520_050 0.1274980377 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
4 Hb_001369_460 0.1279326796 - - vacuolar invertase [Manihot esculenta]
5 Hb_163950_090 0.1331270002 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
6 Hb_000107_580 0.1409894449 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
7 Hb_002710_040 0.1429815896 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
8 Hb_001958_030 0.1453496382 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
9 Hb_005736_120 0.1458108276 - - PREDICTED: carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic [Gossypium raimondii]
10 Hb_145188_010 0.1483988833 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
11 Hb_174168_010 0.1485101425 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_003101_020 0.1486337881 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
13 Hb_000358_160 0.1487608949 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
14 Hb_006267_040 0.1498048305 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
15 Hb_024494_010 0.1510747838 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
16 Hb_003043_130 0.1510913262 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
17 Hb_092516_010 0.1522289675 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
18 Hb_108576_020 0.1538932976 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004218_060 0.1540414937 - - annexin [Manihot esculenta]
20 Hb_002066_100 0.1546755097 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]

Gene co-expression network

sample Hb_000958_060 Hb_000958_060 Hb_008221_190 Hb_008221_190 Hb_000958_060--Hb_008221_190 Hb_007520_050 Hb_007520_050 Hb_000958_060--Hb_007520_050 Hb_001369_460 Hb_001369_460 Hb_000958_060--Hb_001369_460 Hb_163950_090 Hb_163950_090 Hb_000958_060--Hb_163950_090 Hb_000107_580 Hb_000107_580 Hb_000958_060--Hb_000107_580 Hb_002710_040 Hb_002710_040 Hb_000958_060--Hb_002710_040 Hb_008221_190--Hb_163950_090 Hb_004218_060 Hb_004218_060 Hb_008221_190--Hb_004218_060 Hb_145188_010 Hb_145188_010 Hb_008221_190--Hb_145188_010 Hb_008221_190--Hb_002710_040 Hb_001942_060 Hb_001942_060 Hb_008221_190--Hb_001942_060 Hb_174168_010 Hb_174168_010 Hb_007520_050--Hb_174168_010 Hb_003101_020 Hb_003101_020 Hb_007520_050--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_007520_050--Hb_001439_050 Hb_062807_010 Hb_062807_010 Hb_007520_050--Hb_062807_010 Hb_007520_050--Hb_001369_460 Hb_005305_160 Hb_005305_160 Hb_007520_050--Hb_005305_160 Hb_001369_460--Hb_174168_010 Hb_040718_010 Hb_040718_010 Hb_001369_460--Hb_040718_010 Hb_000947_010 Hb_000947_010 Hb_001369_460--Hb_000947_010 Hb_006938_060 Hb_006938_060 Hb_001369_460--Hb_006938_060 Hb_003043_130 Hb_003043_130 Hb_001369_460--Hb_003043_130 Hb_005736_120 Hb_005736_120 Hb_163950_090--Hb_005736_120 Hb_163950_090--Hb_001942_060 Hb_163950_090--Hb_002710_040 Hb_000749_140 Hb_000749_140 Hb_163950_090--Hb_000749_140 Hb_163950_090--Hb_004218_060 Hb_163950_090--Hb_145188_010 Hb_003050_140 Hb_003050_140 Hb_000107_580--Hb_003050_140 Hb_000152_650 Hb_000152_650 Hb_000107_580--Hb_000152_650 Hb_001369_590 Hb_001369_590 Hb_000107_580--Hb_001369_590 Hb_105148_020 Hb_105148_020 Hb_000107_580--Hb_105148_020 Hb_001357_160 Hb_001357_160 Hb_000107_580--Hb_001357_160 Hb_074240_030 Hb_074240_030 Hb_000107_580--Hb_074240_030 Hb_001958_030 Hb_001958_030 Hb_002710_040--Hb_001958_030 Hb_003387_010 Hb_003387_010 Hb_002710_040--Hb_003387_010 Hb_000188_070 Hb_000188_070 Hb_002710_040--Hb_000188_070 Hb_002710_040--Hb_004218_060 Hb_002710_040--Hb_001942_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.972761 39.6521 9.1581 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.895634 1.01238 3.77406 17.9759

CAGE analysis