Hb_000958_080

Information

Type -
Description -
Location Contig958: 46495-58913
Sequence    

Annotation

kegg
ID rcu:RCOM_0967820
description hypothetical protein
nr
ID XP_002517810.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q620W3
description Protein EFR3 homolog OS=Caenorhabditis briggsae GN=CBG02625 PE=3 SV=1
trembl
ID B9RVP1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0967820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63583: 48355-49181 , PASA_asmbl_63584: 49200-51560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004096_160 0.0459936318 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
3 Hb_009449_060 0.0681605594 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
4 Hb_005322_050 0.0720672825 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
5 Hb_000089_210 0.0735306395 - - unknown [Medicago truncatula]
6 Hb_002909_040 0.0737146047 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
7 Hb_005730_010 0.0758809519 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
8 Hb_002311_380 0.076220328 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
9 Hb_003449_100 0.0786672961 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
10 Hb_000300_550 0.0799002248 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
11 Hb_003506_030 0.0811357675 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_007163_060 0.0828372462 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
13 Hb_161568_010 0.0843956135 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
14 Hb_172257_010 0.0855233721 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
15 Hb_000703_160 0.087481541 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
16 Hb_000805_210 0.0881033987 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
17 Hb_000236_490 0.089586483 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
18 Hb_164945_010 0.0899290092 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
19 Hb_005381_020 0.0902408492 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
20 Hb_001699_010 0.0907443906 - - drought-inducible protein [Manihot esculenta]

Gene co-expression network

sample Hb_000958_080 Hb_000958_080 Hb_004096_160 Hb_004096_160 Hb_000958_080--Hb_004096_160 Hb_009449_060 Hb_009449_060 Hb_000958_080--Hb_009449_060 Hb_005322_050 Hb_005322_050 Hb_000958_080--Hb_005322_050 Hb_000089_210 Hb_000089_210 Hb_000958_080--Hb_000089_210 Hb_002909_040 Hb_002909_040 Hb_000958_080--Hb_002909_040 Hb_005730_010 Hb_005730_010 Hb_000958_080--Hb_005730_010 Hb_004096_160--Hb_002909_040 Hb_004096_160--Hb_009449_060 Hb_004096_160--Hb_000089_210 Hb_161568_010 Hb_161568_010 Hb_004096_160--Hb_161568_010 Hb_000236_490 Hb_000236_490 Hb_004096_160--Hb_000236_490 Hb_009449_060--Hb_002909_040 Hb_172257_010 Hb_172257_010 Hb_009449_060--Hb_172257_010 Hb_000866_450 Hb_000866_450 Hb_009449_060--Hb_000866_450 Hb_007163_060 Hb_007163_060 Hb_009449_060--Hb_007163_060 Hb_000300_550 Hb_000300_550 Hb_005322_050--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_005322_050--Hb_000302_170 Hb_005322_050--Hb_172257_010 Hb_005322_050--Hb_007163_060 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000207_200 Hb_000207_200 Hb_000089_210--Hb_000207_200 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030 Hb_002909_040--Hb_000207_200 Hb_000513_090 Hb_000513_090 Hb_002909_040--Hb_000513_090 Hb_002326_110 Hb_002326_110 Hb_002909_040--Hb_002326_110 Hb_023313_040 Hb_023313_040 Hb_005730_010--Hb_023313_040 Hb_025668_010 Hb_025668_010 Hb_005730_010--Hb_025668_010 Hb_005730_010--Hb_004096_160 Hb_000702_090 Hb_000702_090 Hb_005730_010--Hb_000702_090 Hb_007413_040 Hb_007413_040 Hb_005730_010--Hb_007413_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.577774 0.9128 1.41063 1.18834 0.667806 0.457774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.335394 0.475082 0.303291 0.606912 0.496197

CAGE analysis