Hb_000958_100

Information

Type -
Description -
Location Contig958: 68453-70762
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID XP_012065700.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID A0A067L8J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_100 0.0 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_021079_020 0.1714640255 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
3 Hb_007317_130 0.1727523819 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
4 Hb_015778_060 0.1802598444 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
5 Hb_000212_370 0.1822355571 - - thioredoxin f-type, putative [Ricinus communis]
6 Hb_004162_190 0.1880698019 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
7 Hb_002078_270 0.1907844545 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
8 Hb_000856_320 0.1931571935 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
9 Hb_065525_070 0.1968929504 - - unnamed protein product [Homo sapiens]
10 Hb_005183_140 0.1988270849 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
11 Hb_014006_010 0.2005388166 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
12 Hb_000154_130 0.2014684783 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
13 Hb_002016_050 0.2033593481 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
14 Hb_001221_360 0.2052283338 - - late embryogenesis abundant, putative [Ricinus communis]
15 Hb_013399_090 0.2053975019 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
16 Hb_007576_150 0.2076646609 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
17 Hb_000320_360 0.2085101531 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
18 Hb_080761_010 0.210378684 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000340_360 0.2130389806 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
20 Hb_001408_120 0.2153683003 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000958_100 Hb_000958_100 Hb_021079_020 Hb_021079_020 Hb_000958_100--Hb_021079_020 Hb_007317_130 Hb_007317_130 Hb_000958_100--Hb_007317_130 Hb_015778_060 Hb_015778_060 Hb_000958_100--Hb_015778_060 Hb_000212_370 Hb_000212_370 Hb_000958_100--Hb_000212_370 Hb_004162_190 Hb_004162_190 Hb_000958_100--Hb_004162_190 Hb_002078_270 Hb_002078_270 Hb_000958_100--Hb_002078_270 Hb_000376_210 Hb_000376_210 Hb_021079_020--Hb_000376_210 Hb_001221_300 Hb_001221_300 Hb_021079_020--Hb_001221_300 Hb_013399_090 Hb_013399_090 Hb_021079_020--Hb_013399_090 Hb_000340_360 Hb_000340_360 Hb_021079_020--Hb_000340_360 Hb_021079_020--Hb_015778_060 Hb_000170_160 Hb_000170_160 Hb_021079_020--Hb_000170_160 Hb_007317_130--Hb_002078_270 Hb_001080_030 Hb_001080_030 Hb_007317_130--Hb_001080_030 Hb_007317_130--Hb_000212_370 Hb_005695_080 Hb_005695_080 Hb_007317_130--Hb_005695_080 Hb_000032_400 Hb_000032_400 Hb_007317_130--Hb_000032_400 Hb_002973_110 Hb_002973_110 Hb_015778_060--Hb_002973_110 Hb_000186_080 Hb_000186_080 Hb_015778_060--Hb_000186_080 Hb_002986_070 Hb_002986_070 Hb_015778_060--Hb_002986_070 Hb_015778_060--Hb_013399_090 Hb_000320_360 Hb_000320_360 Hb_015778_060--Hb_000320_360 Hb_000212_370--Hb_021079_020 Hb_000212_370--Hb_004162_190 Hb_005288_180 Hb_005288_180 Hb_000212_370--Hb_005288_180 Hb_007576_150 Hb_007576_150 Hb_000212_370--Hb_007576_150 Hb_002799_130 Hb_002799_130 Hb_000212_370--Hb_002799_130 Hb_003494_130 Hb_003494_130 Hb_000212_370--Hb_003494_130 Hb_005701_130 Hb_005701_130 Hb_004162_190--Hb_005701_130 Hb_004162_190--Hb_021079_020 Hb_004162_190--Hb_000186_080 Hb_006816_370 Hb_006816_370 Hb_004162_190--Hb_006816_370 Hb_000170_130 Hb_000170_130 Hb_004162_190--Hb_000170_130 Hb_000538_280 Hb_000538_280 Hb_004162_190--Hb_000538_280 Hb_005917_030 Hb_005917_030 Hb_002078_270--Hb_005917_030 Hb_000920_130 Hb_000920_130 Hb_002078_270--Hb_000920_130 Hb_002078_270--Hb_005695_080 Hb_001054_070 Hb_001054_070 Hb_002078_270--Hb_001054_070 Hb_000406_190 Hb_000406_190 Hb_002078_270--Hb_000406_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0710409 1.45934 0.405935 0.289561 0.314503 0.158826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100106 0.157467 0.362535 0.221583 1.85361

CAGE analysis