Hb_000958_110

Information

Type -
Description -
Location Contig958: 85402-96223
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06460g
description POPTRDRAFT_722815; hypothetical protein
nr
ID XP_012065583.1
description PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
swissprot
ID Q38859
description DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana GN=NRPB11 PE=1 SV=1
trembl
ID A0A067LG12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16777 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63590: 85491-87226 , PASA_asmbl_63592: 89062-90251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_110 0.0 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
2 Hb_003050_220 0.0742945676 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
3 Hb_000015_040 0.0802055415 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
4 Hb_000002_340 0.0850323779 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
5 Hb_002232_410 0.0865271209 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
6 Hb_003151_040 0.0870292516 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
7 Hb_017224_030 0.0882639571 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
8 Hb_008013_050 0.0883427539 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
9 Hb_001983_020 0.0893344009 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
10 Hb_000030_030 0.0909550119 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
11 Hb_001902_140 0.0910134022 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
12 Hb_003502_060 0.0924696543 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
13 Hb_002107_030 0.0924744912 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
14 Hb_000684_470 0.092945271 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
15 Hb_089995_010 0.0933502822 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
16 Hb_011883_010 0.0939053169 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
17 Hb_000152_500 0.0952833875 - - PREDICTED: probable mitochondrial intermediate peptidase, mitochondrial [Jatropha curcas]
18 Hb_000930_030 0.0960896856 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
19 Hb_029584_050 0.0968998369 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
20 Hb_000347_030 0.0970709689 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]

Gene co-expression network

sample Hb_000958_110 Hb_000958_110 Hb_003050_220 Hb_003050_220 Hb_000958_110--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_000958_110--Hb_000015_040 Hb_000002_340 Hb_000002_340 Hb_000958_110--Hb_000002_340 Hb_002232_410 Hb_002232_410 Hb_000958_110--Hb_002232_410 Hb_003151_040 Hb_003151_040 Hb_000958_110--Hb_003151_040 Hb_017224_030 Hb_017224_030 Hb_000958_110--Hb_017224_030 Hb_001579_220 Hb_001579_220 Hb_003050_220--Hb_001579_220 Hb_001902_140 Hb_001902_140 Hb_003050_220--Hb_001902_140 Hb_003050_220--Hb_000015_040 Hb_032202_190 Hb_032202_190 Hb_003050_220--Hb_032202_190 Hb_002107_030 Hb_002107_030 Hb_003050_220--Hb_002107_030 Hb_029584_050 Hb_029584_050 Hb_000015_040--Hb_029584_050 Hb_000015_040--Hb_001579_220 Hb_006615_020 Hb_006615_020 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010 Hb_000930_030 Hb_000930_030 Hb_000002_340--Hb_000930_030 Hb_000732_010 Hb_000732_010 Hb_000002_340--Hb_000732_010 Hb_000002_340--Hb_002107_030 Hb_003057_100 Hb_003057_100 Hb_000002_340--Hb_003057_100 Hb_001396_200 Hb_001396_200 Hb_000002_340--Hb_001396_200 Hb_008725_230 Hb_008725_230 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_002232_410--Hb_000732_010 Hb_005271_220 Hb_005271_220 Hb_002232_410--Hb_005271_220 Hb_000028_370 Hb_000028_370 Hb_002232_410--Hb_000028_370 Hb_005846_040 Hb_005846_040 Hb_003151_040--Hb_005846_040 Hb_001766_060 Hb_001766_060 Hb_003151_040--Hb_001766_060 Hb_000373_070 Hb_000373_070 Hb_003151_040--Hb_000373_070 Hb_006059_050 Hb_006059_050 Hb_003151_040--Hb_006059_050 Hb_000152_500 Hb_000152_500 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060 Hb_011883_010 Hb_011883_010 Hb_017224_030--Hb_011883_010 Hb_000035_320 Hb_000035_320 Hb_017224_030--Hb_000035_320 Hb_002685_110 Hb_002685_110 Hb_017224_030--Hb_002685_110 Hb_005291_030 Hb_005291_030 Hb_017224_030--Hb_005291_030 Hb_003092_040 Hb_003092_040 Hb_017224_030--Hb_003092_040 Hb_000059_330 Hb_000059_330 Hb_017224_030--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.75826 7.58944 5.45551 6.48224 4.56218 7.19626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.398 10.2791 8.84161 7.60609 8.07972

CAGE analysis