Hb_000958_130

Information

Type -
Description -
Location Contig958: 100446-105429
Sequence    

Annotation

kegg
ID cit:102613387
description tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
nr
ID XP_012065581.1
description PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
swissprot
ID Q7UBC5
description tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3 SV=3
trembl
ID V4TL17
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031578mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description trna-dihydrouridine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63594: 100278-100427 , PASA_asmbl_63595: 100505-105392
cDNA
(Sanger)
(ID:Location)		 047_I05.ab1: 100505-102651

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_130 0.0 - - PREDICTED: uncharacterized protein LOC105628716 isoform X1 [Jatropha curcas]
2 Hb_001956_040 0.0826953573 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000836_430 0.117149118 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
4 Hb_003029_070 0.1211758492 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_007101_160 0.1215523501 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000390_310 0.1234205911 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
7 Hb_000753_240 0.1283019181 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
8 Hb_000390_130 0.1290641598 - - PREDICTED: dnaJ protein ERDJ3B isoform X2 [Jatropha curcas]
9 Hb_012016_010 0.1304938138 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
10 Hb_001998_120 0.1306627693 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
11 Hb_029142_060 0.1316153368 - - PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Jatropha curcas]
12 Hb_000690_160 0.1336807963 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]
13 Hb_002876_220 0.1362091453 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
14 Hb_012725_070 0.1364408671 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
15 Hb_001699_210 0.136499724 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 isoform X1 [Jatropha curcas]
16 Hb_000661_140 0.1372119751 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
17 Hb_000260_100 0.1378648053 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001329_130 0.1381745295 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001675_300 0.1383325806 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
20 Hb_001357_090 0.138414637 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000958_130 Hb_000958_130 Hb_001956_040 Hb_001956_040 Hb_000958_130--Hb_001956_040 Hb_000836_430 Hb_000836_430 Hb_000958_130--Hb_000836_430 Hb_003029_070 Hb_003029_070 Hb_000958_130--Hb_003029_070 Hb_007101_160 Hb_007101_160 Hb_000958_130--Hb_007101_160 Hb_000390_310 Hb_000390_310 Hb_000958_130--Hb_000390_310 Hb_000753_240 Hb_000753_240 Hb_000958_130--Hb_000753_240 Hb_001956_040--Hb_003029_070 Hb_005975_010 Hb_005975_010 Hb_001956_040--Hb_005975_010 Hb_003579_050 Hb_003579_050 Hb_001956_040--Hb_003579_050 Hb_002284_150 Hb_002284_150 Hb_001956_040--Hb_002284_150 Hb_000300_180 Hb_000300_180 Hb_001956_040--Hb_000300_180 Hb_000661_140 Hb_000661_140 Hb_000836_430--Hb_000661_140 Hb_002026_140 Hb_002026_140 Hb_000836_430--Hb_002026_140 Hb_003621_020 Hb_003621_020 Hb_000836_430--Hb_003621_020 Hb_004128_200 Hb_004128_200 Hb_000836_430--Hb_004128_200 Hb_001898_240 Hb_001898_240 Hb_000836_430--Hb_001898_240 Hb_003029_070--Hb_000753_240 Hb_002876_220 Hb_002876_220 Hb_003029_070--Hb_002876_220 Hb_003029_070--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_003029_070--Hb_012022_150 Hb_004970_190 Hb_004970_190 Hb_003029_070--Hb_004970_190 Hb_000804_040 Hb_000804_040 Hb_003029_070--Hb_000804_040 Hb_000424_020 Hb_000424_020 Hb_007101_160--Hb_000424_020 Hb_007101_160--Hb_000390_310 Hb_000436_100 Hb_000436_100 Hb_007101_160--Hb_000436_100 Hb_007101_160--Hb_001956_040 Hb_007313_090 Hb_007313_090 Hb_007101_160--Hb_007313_090 Hb_000948_180 Hb_000948_180 Hb_000390_310--Hb_000948_180 Hb_032202_230 Hb_032202_230 Hb_000390_310--Hb_032202_230 Hb_004951_070 Hb_004951_070 Hb_000390_310--Hb_004951_070 Hb_000175_590 Hb_000175_590 Hb_000390_310--Hb_000175_590 Hb_001652_080 Hb_001652_080 Hb_000390_310--Hb_001652_080 Hb_001213_130 Hb_001213_130 Hb_000390_310--Hb_001213_130 Hb_000753_240--Hb_004970_190 Hb_000866_010 Hb_000866_010 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_002013_020 Hb_002013_020 Hb_000753_240--Hb_002013_020 Hb_000753_240--Hb_000804_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.6659 10.668 43.0649 9.21458 29.2019 20.9192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5164 23.2823 15.9576 3.69761 18.1536

CAGE analysis