Hb_000958_150

Information

Type -
Description -
Location Contig958: 130594-136477
Sequence    

Annotation

kegg
ID rcu:RCOM_0968110
description Actin, putative
nr
ID XP_002517819.1
description Actin, putative [Ricinus communis]
swissprot
ID Q8L4Y5
description Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1
trembl
ID B9RVQ0
description Actin, putative OS=Ricinus communis GN=RCOM_0968110 PE=3 SV=1
Gene Ontology
ID GO:0005634
description actin-related protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63600: 130670-136467 , PASA_asmbl_63601: 132852-132975 , PASA_asmbl_63602: 131055-131312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_150 0.0 - - Actin, putative [Ricinus communis]
2 Hb_002284_170 0.0519525154 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
3 Hb_056987_010 0.0631529888 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
4 Hb_102438_030 0.066889475 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
5 Hb_030545_030 0.0672376309 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
6 Hb_002092_070 0.0683162223 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
7 Hb_096819_010 0.0718261241 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
8 Hb_000302_170 0.0762056257 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
9 Hb_000264_070 0.0768003667 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
10 Hb_011920_020 0.079791274 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
11 Hb_118840_050 0.0833602417 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
12 Hb_004429_010 0.0843685541 - - calcineurin-like phosphoesterase [Manihot esculenta]
13 Hb_002045_250 0.0846864901 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
14 Hb_004032_230 0.0851216529 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
15 Hb_002903_140 0.0853528785 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
16 Hb_000069_130 0.0854168314 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
17 Hb_007017_070 0.085544029 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
18 Hb_000264_080 0.0857918135 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
19 Hb_000700_060 0.0859414679 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
20 Hb_001033_050 0.0860593207 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]

Gene co-expression network

sample Hb_000958_150 Hb_000958_150 Hb_002284_170 Hb_002284_170 Hb_000958_150--Hb_002284_170 Hb_056987_010 Hb_056987_010 Hb_000958_150--Hb_056987_010 Hb_102438_030 Hb_102438_030 Hb_000958_150--Hb_102438_030 Hb_030545_030 Hb_030545_030 Hb_000958_150--Hb_030545_030 Hb_002092_070 Hb_002092_070 Hb_000958_150--Hb_002092_070 Hb_096819_010 Hb_096819_010 Hb_000958_150--Hb_096819_010 Hb_002284_170--Hb_002092_070 Hb_004429_010 Hb_004429_010 Hb_002284_170--Hb_004429_010 Hb_000949_020 Hb_000949_020 Hb_002284_170--Hb_000949_020 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_009252_050 Hb_009252_050 Hb_002284_170--Hb_009252_050 Hb_000264_080 Hb_000264_080 Hb_056987_010--Hb_000264_080 Hb_056987_010--Hb_002284_170 Hb_000139_320 Hb_000139_320 Hb_056987_010--Hb_000139_320 Hb_073171_090 Hb_073171_090 Hb_056987_010--Hb_073171_090 Hb_000302_170 Hb_000302_170 Hb_056987_010--Hb_000302_170 Hb_102438_030--Hb_030545_030 Hb_000102_050 Hb_000102_050 Hb_102438_030--Hb_000102_050 Hb_004032_230 Hb_004032_230 Hb_102438_030--Hb_004032_230 Hb_007017_070 Hb_007017_070 Hb_102438_030--Hb_007017_070 Hb_102438_030--Hb_000139_320 Hb_002903_140 Hb_002903_140 Hb_030545_030--Hb_002903_140 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_030545_030--Hb_096819_010 Hb_002045_250 Hb_002045_250 Hb_002092_070--Hb_002045_250 Hb_002092_070--Hb_004429_010 Hb_001221_090 Hb_001221_090 Hb_002092_070--Hb_001221_090 Hb_002092_070--Hb_009252_050 Hb_096819_010--Hb_002903_140 Hb_096819_010--Hb_008165_030 Hb_011920_020 Hb_011920_020 Hb_096819_010--Hb_011920_020 Hb_002902_020 Hb_002902_020 Hb_096819_010--Hb_002902_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.134 32.2997 22.6099 19.9691 19.9034 20.3929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.85928 6.92325 6.32805 15.4679 10.9802

CAGE analysis