Hb_000958_170

Information

Type -
Description -
Location Contig958: 149734-155080
Sequence    

Annotation

kegg
ID rcu:RCOM_0968450
description Polygalacturonase precursor, putative (EC:3.2.1.15)
nr
ID XP_002517823.1
description Polygalacturonase precursor, putative [Ricinus communis]
swissprot
ID P35336
description Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1
trembl
ID B9RVQ4
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_0968450 PE=3 SV=1
Gene Ontology
ID GO:0016787
description polygalacturonase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000007_050 0.0 - - -
2 Hb_000075_050 0.0 - - -
3 Hb_000076_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
4 Hb_000103_500 0.0 - - RNA binding protein, putative [Ricinus communis]
5 Hb_000130_290 0.0 - - glycosyltransferase, putative [Ricinus communis]
6 Hb_000159_010 0.0 - - -
7 Hb_000184_060 0.0 - - -
8 Hb_000193_020 0.0 - - -
9 Hb_000340_470 0.0 - - -
10 Hb_000380_080 0.0 - - hypothetical protein JCGZ_05489 [Jatropha curcas]
11 Hb_000431_110 0.0 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
12 Hb_000465_370 0.0 - - hypothetical protein CISIN_1g039324mg, partial [Citrus sinensis]
13 Hb_000732_040 0.0 transcription factor TF Family: MYB Transcription repressor MYB4, putative [Ricinus communis]
14 Hb_000884_010 0.0 - - -
15 Hb_000958_170 0.0 - - Polygalacturonase precursor, putative [Ricinus communis]
16 Hb_001085_130 0.0 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
17 Hb_001097_150 0.0 - - Peroxidase 27 precursor, putative [Ricinus communis]
18 Hb_001099_010 0.0 - - -
19 Hb_001158_060 0.0 - - -
20 Hb_001366_020 0.0 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]

Gene co-expression network

sample Hb_000007_050 Hb_000007_050 Hb_000075_050 Hb_000075_050 Hb_000007_050--Hb_000075_050 Hb_000076_010 Hb_000076_010 Hb_000007_050--Hb_000076_010 Hb_000103_500 Hb_000103_500 Hb_000007_050--Hb_000103_500 Hb_000130_290 Hb_000130_290 Hb_000007_050--Hb_000130_290 Hb_000159_010 Hb_000159_010 Hb_000007_050--Hb_000159_010 Hb_000184_060 Hb_000184_060 Hb_000007_050--Hb_000184_060 Hb_000007_050--Hb_000075_050 Hb_000007_050--Hb_000076_010 Hb_000007_050--Hb_000103_500 Hb_000007_050--Hb_000130_290 Hb_000007_050--Hb_000159_010 Hb_000007_050--Hb_000184_060 Hb_000007_050--Hb_000075_050 Hb_000007_050--Hb_000076_010 Hb_000007_050--Hb_000103_500 Hb_000007_050--Hb_000130_290 Hb_000007_050--Hb_000159_010 Hb_000007_050--Hb_000184_060 Hb_000007_050--Hb_000075_050 Hb_000007_050--Hb_000076_010 Hb_000007_050--Hb_000103_500 Hb_000007_050--Hb_000130_290 Hb_000007_050--Hb_000159_010 Hb_000007_050--Hb_000184_060 Hb_000007_050--Hb_000075_050 Hb_000007_050--Hb_000076_010 Hb_000007_050--Hb_000103_500 Hb_000007_050--Hb_000130_290 Hb_000007_050--Hb_000159_010 Hb_000007_050--Hb_000184_060 Hb_000007_050--Hb_000075_050 Hb_000007_050--Hb_000076_010 Hb_000007_050--Hb_000103_500 Hb_000007_050--Hb_000130_290 Hb_000007_050--Hb_000159_010 Hb_000007_050--Hb_000184_060 Hb_000007_050--Hb_000075_050 Hb_000007_050--Hb_000076_010 Hb_000007_050--Hb_000103_500 Hb_000007_050--Hb_000130_290 Hb_000007_050--Hb_000159_010 Hb_000007_050--Hb_000184_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0215181 0 0 0 0

CAGE analysis