Hb_000959_030

Information

Type -
Description -
Location Contig959: 9233-16187
Sequence    

Annotation

kegg
ID rcu:RCOM_0075490
description mitochondrial carrier protein, putative
nr
ID XP_002530256.1
description mitochondrial carrier protein, putative [Ricinus communis]
swissprot
ID Q94AG6
description S-adenosylmethionine carrier 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SAMC1 PE=1 SV=1
trembl
ID B9SW87
description Mitochondrial carrier protein, putative OS=Ricinus communis GN=RCOM_0075490 PE=3 SV=1
Gene Ontology
ID GO:0005743
description s-adenosylmethionine carrier chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_030 0.0 - - mitochondrial carrier protein, putative [Ricinus communis]
2 Hb_011021_020 0.0961463634 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
3 Hb_001922_170 0.0995898298 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
4 Hb_029695_110 0.0996742229 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
5 Hb_005405_020 0.1060326629 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
6 Hb_001205_300 0.1087598648 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
7 Hb_009225_020 0.1106596459 - - PREDICTED: uncharacterized protein LOC105638232 [Jatropha curcas]
8 Hb_004994_050 0.1133606487 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
9 Hb_000740_050 0.1145951191 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
10 Hb_000579_120 0.1161342728 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
11 Hb_002496_020 0.1170924122 - - DNA binding protein, putative [Ricinus communis]
12 Hb_004531_140 0.1179810781 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
13 Hb_069662_010 0.1216519714 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
14 Hb_000110_310 0.1221108236 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
15 Hb_002184_150 0.1230735479 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_001022_030 0.1232011403 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
17 Hb_002304_080 0.1237410805 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]
18 Hb_003462_070 0.1239851189 - - arsenical pump-driving atpase, putative [Ricinus communis]
19 Hb_054865_120 0.1240112035 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
20 Hb_002820_050 0.1257742847 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_030 Hb_000959_030 Hb_011021_020 Hb_011021_020 Hb_000959_030--Hb_011021_020 Hb_001922_170 Hb_001922_170 Hb_000959_030--Hb_001922_170 Hb_029695_110 Hb_029695_110 Hb_000959_030--Hb_029695_110 Hb_005405_020 Hb_005405_020 Hb_000959_030--Hb_005405_020 Hb_001205_300 Hb_001205_300 Hb_000959_030--Hb_001205_300 Hb_009225_020 Hb_009225_020 Hb_000959_030--Hb_009225_020 Hb_002496_020 Hb_002496_020 Hb_011021_020--Hb_002496_020 Hb_005847_060 Hb_005847_060 Hb_011021_020--Hb_005847_060 Hb_004191_020 Hb_004191_020 Hb_011021_020--Hb_004191_020 Hb_000193_270 Hb_000193_270 Hb_011021_020--Hb_000193_270 Hb_000224_160 Hb_000224_160 Hb_011021_020--Hb_000224_160 Hb_054865_120 Hb_054865_120 Hb_001922_170--Hb_054865_120 Hb_006570_140 Hb_006570_140 Hb_001922_170--Hb_006570_140 Hb_001922_170--Hb_005847_060 Hb_001579_270 Hb_001579_270 Hb_001922_170--Hb_001579_270 Hb_002820_050 Hb_002820_050 Hb_001922_170--Hb_002820_050 Hb_000094_330 Hb_000094_330 Hb_001922_170--Hb_000094_330 Hb_000920_030 Hb_000920_030 Hb_029695_110--Hb_000920_030 Hb_029695_110--Hb_001205_300 Hb_003462_070 Hb_003462_070 Hb_029695_110--Hb_003462_070 Hb_002304_080 Hb_002304_080 Hb_029695_110--Hb_002304_080 Hb_000723_100 Hb_000723_100 Hb_029695_110--Hb_000723_100 Hb_000212_440 Hb_000212_440 Hb_005405_020--Hb_000212_440 Hb_005405_020--Hb_009225_020 Hb_003376_230 Hb_003376_230 Hb_005405_020--Hb_003376_230 Hb_003153_010 Hb_003153_010 Hb_005405_020--Hb_003153_010 Hb_000797_040 Hb_000797_040 Hb_005405_020--Hb_000797_040 Hb_005405_020--Hb_000224_160 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_003728_100 Hb_003728_100 Hb_009225_020--Hb_003728_100 Hb_000207_300 Hb_000207_300 Hb_009225_020--Hb_000207_300 Hb_009225_020--Hb_003462_070 Hb_000221_140 Hb_000221_140 Hb_009225_020--Hb_000221_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5019 5.90234 23.7196 18.5281 13.7098 22.6619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.6611 13.3193 9.73338 9.80049 24.5212

CAGE analysis