Hb_000959_130

Information

Type -
Description -
Location Contig959: 130538-143123
Sequence    

Annotation

kegg
ID rcu:RCOM_0031070
description organic anion transporter, putative
nr
ID XP_002533887.1
description organic anion transporter, putative [Ricinus communis]
swissprot
ID Q9SRE4
description UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1
trembl
ID B9T6L8
description Organic anion transporter, putative OS=Ricinus communis GN=RCOM_0031070 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-galactose transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63641: 130747-141989 , PASA_asmbl_63642: 139995-140278 , PASA_asmbl_63643: 143160-143266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_130 0.0 - - organic anion transporter, putative [Ricinus communis]
2 Hb_001404_070 0.1013991477 - - sucrose synthase 4 [Hevea brasiliensis]
3 Hb_134014_010 0.1061611484 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
4 Hb_006615_230 0.1122125703 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
5 Hb_012395_050 0.1169381448 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
6 Hb_000574_170 0.1331956101 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
7 Hb_189003_070 0.1382827471 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
8 Hb_000077_100 0.1389762801 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
9 Hb_002203_020 0.1395831913 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033312_070 0.139710107 - - hypothetical protein POPTR_0017s02960g [Populus trichocarpa]
11 Hb_002073_170 0.1420719149 - - PREDICTED: probable inactive receptor kinase At1g27190 [Jatropha curcas]
12 Hb_006788_110 0.1436773008 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
13 Hb_155444_010 0.1474571802 - - -
14 Hb_030565_100 0.1484414714 - - serine hydroxymethyltransferase, putative [Ricinus communis]
15 Hb_006889_030 0.1492527892 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
16 Hb_158092_040 0.1507668504 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
17 Hb_002495_030 0.1507998716 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
18 Hb_002809_080 0.1510080949 - - conserved hypothetical protein [Ricinus communis]
19 Hb_029223_040 0.1521749605 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
20 Hb_141194_020 0.1531445455 - - carbohydrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000959_130 Hb_000959_130 Hb_001404_070 Hb_001404_070 Hb_000959_130--Hb_001404_070 Hb_134014_010 Hb_134014_010 Hb_000959_130--Hb_134014_010 Hb_006615_230 Hb_006615_230 Hb_000959_130--Hb_006615_230 Hb_012395_050 Hb_012395_050 Hb_000959_130--Hb_012395_050 Hb_000574_170 Hb_000574_170 Hb_000959_130--Hb_000574_170 Hb_189003_070 Hb_189003_070 Hb_000959_130--Hb_189003_070 Hb_002750_040 Hb_002750_040 Hb_001404_070--Hb_002750_040 Hb_005545_110 Hb_005545_110 Hb_001404_070--Hb_005545_110 Hb_009456_010 Hb_009456_010 Hb_001404_070--Hb_009456_010 Hb_141194_020 Hb_141194_020 Hb_001404_070--Hb_141194_020 Hb_004667_030 Hb_004667_030 Hb_001404_070--Hb_004667_030 Hb_134014_010--Hb_006615_230 Hb_134014_010--Hb_189003_070 Hb_134014_010--Hb_012395_050 Hb_029223_040 Hb_029223_040 Hb_134014_010--Hb_029223_040 Hb_158092_040 Hb_158092_040 Hb_134014_010--Hb_158092_040 Hb_006615_230--Hb_189003_070 Hb_098795_030 Hb_098795_030 Hb_006615_230--Hb_098795_030 Hb_001119_070 Hb_001119_070 Hb_006615_230--Hb_001119_070 Hb_006615_230--Hb_158092_040 Hb_002495_030 Hb_002495_030 Hb_006615_230--Hb_002495_030 Hb_155444_010 Hb_155444_010 Hb_012395_050--Hb_155444_010 Hb_179960_010 Hb_179960_010 Hb_012395_050--Hb_179960_010 Hb_029142_040 Hb_029142_040 Hb_012395_050--Hb_029142_040 Hb_000997_240 Hb_000997_240 Hb_012395_050--Hb_000997_240 Hb_000333_030 Hb_000333_030 Hb_000574_170--Hb_000333_030 Hb_002217_360 Hb_002217_360 Hb_000574_170--Hb_002217_360 Hb_000482_120 Hb_000482_120 Hb_000574_170--Hb_000482_120 Hb_010222_040 Hb_010222_040 Hb_000574_170--Hb_010222_040 Hb_010337_040 Hb_010337_040 Hb_000574_170--Hb_010337_040 Hb_006736_050 Hb_006736_050 Hb_189003_070--Hb_006736_050 Hb_036388_010 Hb_036388_010 Hb_189003_070--Hb_036388_010 Hb_000417_380 Hb_000417_380 Hb_189003_070--Hb_000417_380 Hb_189003_070--Hb_001119_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.247198 2.16271 7.83393 22.2029 0.819602 0.665115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0585907 0.184385 0.737668 6.42598 9.18207

CAGE analysis