Hb_000959_150

Information

Type -
Description -
Location Contig959: 155427-155696
Sequence    

Annotation

kegg
ID vvi:104879927
description uncharacterized LOC104879927
nr
ID XP_010652886.1
description PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6H4C1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_150 0.0 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
2 Hb_014096_010 0.1450908289 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_140024_010 0.1488973995 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
4 Hb_010050_010 0.154921923 - - -
5 Hb_000563_620 0.1583570775 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
6 Hb_004241_050 0.1591016096 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
7 Hb_008536_030 0.1654464592 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
8 Hb_002999_010 0.1708818907 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
9 Hb_001091_010 0.1716118696 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
10 Hb_016120_030 0.1738195854 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
11 Hb_060236_010 0.1761789165 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
12 Hb_001115_010 0.1818736971 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
13 Hb_004031_060 0.1827845526 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
14 Hb_000480_050 0.1846124187 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
15 Hb_082733_010 0.1862866807 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
16 Hb_059226_020 0.1918159493 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
17 Hb_000237_010 0.1937167857 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
18 Hb_006326_020 0.1975160128 - - -
19 Hb_005245_030 0.198226393 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
20 Hb_007007_020 0.2006522827 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000959_150 Hb_000959_150 Hb_014096_010 Hb_014096_010 Hb_000959_150--Hb_014096_010 Hb_140024_010 Hb_140024_010 Hb_000959_150--Hb_140024_010 Hb_010050_010 Hb_010050_010 Hb_000959_150--Hb_010050_010 Hb_000563_620 Hb_000563_620 Hb_000959_150--Hb_000563_620 Hb_004241_050 Hb_004241_050 Hb_000959_150--Hb_004241_050 Hb_008536_030 Hb_008536_030 Hb_000959_150--Hb_008536_030 Hb_001091_010 Hb_001091_010 Hb_014096_010--Hb_001091_010 Hb_004397_010 Hb_004397_010 Hb_014096_010--Hb_004397_010 Hb_082733_010 Hb_082733_010 Hb_014096_010--Hb_082733_010 Hb_059226_020 Hb_059226_020 Hb_014096_010--Hb_059226_020 Hb_004031_060 Hb_004031_060 Hb_014096_010--Hb_004031_060 Hb_016120_030 Hb_016120_030 Hb_140024_010--Hb_016120_030 Hb_000959_200 Hb_000959_200 Hb_140024_010--Hb_000959_200 Hb_002999_010 Hb_002999_010 Hb_140024_010--Hb_002999_010 Hb_140024_010--Hb_004031_060 Hb_000237_010 Hb_000237_010 Hb_140024_010--Hb_000237_010 Hb_010050_010--Hb_000237_010 Hb_010050_010--Hb_000563_620 Hb_010050_010--Hb_140024_010 Hb_010050_010--Hb_002999_010 Hb_007477_020 Hb_007477_020 Hb_010050_010--Hb_007477_020 Hb_060236_010 Hb_060236_010 Hb_000563_620--Hb_060236_010 Hb_000563_620--Hb_004241_050 Hb_006326_020 Hb_006326_020 Hb_000563_620--Hb_006326_020 Hb_007007_020 Hb_007007_020 Hb_000563_620--Hb_007007_020 Hb_000146_100 Hb_000146_100 Hb_000563_620--Hb_000146_100 Hb_041063_010 Hb_041063_010 Hb_000563_620--Hb_041063_010 Hb_004241_050--Hb_060236_010 Hb_004241_050--Hb_041063_010 Hb_000059_110 Hb_000059_110 Hb_004241_050--Hb_000059_110 Hb_001115_010 Hb_001115_010 Hb_004241_050--Hb_001115_010 Hb_004241_050--Hb_082733_010 Hb_003582_010 Hb_003582_010 Hb_008536_030--Hb_003582_010 Hb_008536_030--Hb_059226_020 Hb_022597_010 Hb_022597_010 Hb_008536_030--Hb_022597_010 Hb_080068_010 Hb_080068_010 Hb_008536_030--Hb_080068_010 Hb_002054_090 Hb_002054_090 Hb_008536_030--Hb_002054_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.612016 5.06141 0.18708 76.938 0 2.01991
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 18.5228 2.266

CAGE analysis