Hb_000959_170

Information

Type -
Description -
Location Contig959: 158835-161101
Sequence    

Annotation

kegg
ID rcu:RCOM_0030850
description Cell division protein kinase 7, putative (EC:2.7.11.23)
nr
ID XP_002533885.1
description Cell division protein kinase 7, putative [Ricinus communis]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID B9T6L6
description Cell division protein kinase 7, putative OS=Ricinus communis GN=RCOM_0030850 PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63645: 159090-159530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_170 0.0 - - Cell division protein kinase 7, putative [Ricinus communis]
2 Hb_159791_010 0.0656804082 - - PREDICTED: cytochrome P450 84A1 [Jatropha curcas]
3 Hb_000087_160 0.0727991495 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_004757_010 0.0799282748 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
5 Hb_001141_430 0.0805147078 - - hypothetical protein POPTR_0008s15160g [Populus trichocarpa]
6 Hb_187906_010 0.0843082566 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
7 Hb_025557_090 0.0951822572 - - hypothetical protein glysoja_034865 [Glycine soja]
8 Hb_001343_060 0.0973386901 - - Cytochrome P450 [Theobroma cacao]
9 Hb_180088_010 0.0993577591 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000186_090 0.10155653 - - ACC oxidase 1 [Hevea brasiliensis]
11 Hb_001712_010 0.102268152 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]
12 Hb_170597_010 0.1024667136 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
13 Hb_004807_070 0.1028298769 - - hypothetical protein POPTR_0004s17330g, partial [Populus trichocarpa]
14 Hb_003858_070 0.1036353278 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
15 Hb_001401_110 0.1043924441 - - hypothetical protein JCGZ_04272 [Jatropha curcas]
16 Hb_000230_220 0.1044742869 - - conserved hypothetical protein [Ricinus communis]
17 Hb_069384_010 0.1045567514 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
18 Hb_029508_040 0.1051421929 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
19 Hb_001232_170 0.1051670956 - - sulfate transporter, putative [Ricinus communis]
20 Hb_011344_050 0.1057243826 - - PREDICTED: 21 kDa protein [Jatropha curcas]

Gene co-expression network

sample Hb_000959_170 Hb_000959_170 Hb_159791_010 Hb_159791_010 Hb_000959_170--Hb_159791_010 Hb_000087_160 Hb_000087_160 Hb_000959_170--Hb_000087_160 Hb_004757_010 Hb_004757_010 Hb_000959_170--Hb_004757_010 Hb_001141_430 Hb_001141_430 Hb_000959_170--Hb_001141_430 Hb_187906_010 Hb_187906_010 Hb_000959_170--Hb_187906_010 Hb_025557_090 Hb_025557_090 Hb_000959_170--Hb_025557_090 Hb_159791_010--Hb_001141_430 Hb_159791_010--Hb_004757_010 Hb_001343_060 Hb_001343_060 Hb_159791_010--Hb_001343_060 Hb_000816_170 Hb_000816_170 Hb_159791_010--Hb_000816_170 Hb_159791_010--Hb_000087_160 Hb_011930_090 Hb_011930_090 Hb_000087_160--Hb_011930_090 Hb_000087_160--Hb_187906_010 Hb_019299_010 Hb_019299_010 Hb_000087_160--Hb_019299_010 Hb_000230_220 Hb_000230_220 Hb_000087_160--Hb_000230_220 Hb_004757_010--Hb_001343_060 Hb_004757_010--Hb_001141_430 Hb_011344_050 Hb_011344_050 Hb_004757_010--Hb_011344_050 Hb_027411_030 Hb_027411_030 Hb_004757_010--Hb_027411_030 Hb_001712_010 Hb_001712_010 Hb_004757_010--Hb_001712_010 Hb_001141_430--Hb_001343_060 Hb_011344_110 Hb_011344_110 Hb_001141_430--Hb_011344_110 Hb_001141_430--Hb_000816_170 Hb_001141_430--Hb_001712_010 Hb_001401_110 Hb_001401_110 Hb_187906_010--Hb_001401_110 Hb_000438_180 Hb_000438_180 Hb_187906_010--Hb_000438_180 Hb_187906_010--Hb_019299_010 Hb_009851_120 Hb_009851_120 Hb_187906_010--Hb_009851_120 Hb_009158_010 Hb_009158_010 Hb_025557_090--Hb_009158_010 Hb_116349_080 Hb_116349_080 Hb_025557_090--Hb_116349_080 Hb_000155_030 Hb_000155_030 Hb_025557_090--Hb_000155_030 Hb_022250_140 Hb_022250_140 Hb_025557_090--Hb_022250_140 Hb_025557_090--Hb_000230_220 Hb_000964_120 Hb_000964_120 Hb_025557_090--Hb_000964_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.229178 0.184324 2.72792 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0326817 0.172665

CAGE analysis