Hb_000959_210

Information

Type -
Description -
Location Contig959: 181659-189541
Sequence    

Annotation

kegg
ID rcu:RCOM_0132150
description ubiquitin-specific protease, putative (EC:3.1.2.15)
nr
ID XP_012075280.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
swissprot
ID Q9FPS0
description Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana GN=UBP27 PE=2 SV=1
trembl
ID A0A067KGR6
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_09451 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63650: 185841-187197 , PASA_asmbl_63651: 187837-189434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_210 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
2 Hb_003935_020 0.0313782213 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_002652_030 0.0686993335 - - PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Jatropha curcas]
4 Hb_120410_010 0.0688166346 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
5 Hb_004032_430 0.0692421485 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
6 Hb_004093_090 0.0704969334 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
7 Hb_002530_030 0.0720432899 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
8 Hb_004116_060 0.0762647941 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
9 Hb_000563_230 0.0774800493 - - phospholipase d zeta, putative [Ricinus communis]
10 Hb_008453_140 0.0789016733 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
11 Hb_002234_140 0.079480835 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
12 Hb_005588_030 0.0795127028 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
13 Hb_003125_120 0.0797424653 - - PREDICTED: TITAN-like protein [Jatropha curcas]
14 Hb_006120_070 0.0801309659 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
15 Hb_000275_170 0.0813742668 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
16 Hb_014109_040 0.0813939497 - - PREDICTED: probable folylpolyglutamate synthase [Jatropha curcas]
17 Hb_000317_240 0.0816642689 - - PREDICTED: protein DYAD [Jatropha curcas]
18 Hb_001369_220 0.0832381879 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
19 Hb_001635_180 0.0833718102 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
20 Hb_000009_530 0.0837674159 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_210 Hb_000959_210 Hb_003935_020 Hb_003935_020 Hb_000959_210--Hb_003935_020 Hb_002652_030 Hb_002652_030 Hb_000959_210--Hb_002652_030 Hb_120410_010 Hb_120410_010 Hb_000959_210--Hb_120410_010 Hb_004032_430 Hb_004032_430 Hb_000959_210--Hb_004032_430 Hb_004093_090 Hb_004093_090 Hb_000959_210--Hb_004093_090 Hb_002530_030 Hb_002530_030 Hb_000959_210--Hb_002530_030 Hb_014109_040 Hb_014109_040 Hb_003935_020--Hb_014109_040 Hb_003935_020--Hb_004093_090 Hb_003935_020--Hb_004032_430 Hb_003935_020--Hb_120410_010 Hb_003935_020--Hb_002652_030 Hb_001089_110 Hb_001089_110 Hb_002652_030--Hb_001089_110 Hb_000696_230 Hb_000696_230 Hb_002652_030--Hb_000696_230 Hb_164544_010 Hb_164544_010 Hb_002652_030--Hb_164544_010 Hb_002175_030 Hb_002175_030 Hb_002652_030--Hb_002175_030 Hb_008453_140 Hb_008453_140 Hb_002652_030--Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_001142_030 Hb_001142_030 Hb_120410_010--Hb_001142_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_004310_150 Hb_004310_150 Hb_004032_430--Hb_004310_150 Hb_000275_170 Hb_000275_170 Hb_004032_430--Hb_000275_170 Hb_010068_040 Hb_010068_040 Hb_004032_430--Hb_010068_040 Hb_011224_060 Hb_011224_060 Hb_004032_430--Hb_011224_060 Hb_000610_010 Hb_000610_010 Hb_004093_090--Hb_000610_010 Hb_005588_030 Hb_005588_030 Hb_004093_090--Hb_005588_030 Hb_004093_090--Hb_120410_010 Hb_000362_200 Hb_000362_200 Hb_004093_090--Hb_000362_200 Hb_000009_530 Hb_000009_530 Hb_004093_090--Hb_000009_530 Hb_000317_240 Hb_000317_240 Hb_002530_030--Hb_000317_240 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.3944 5.17293 6.31795 3.50884 7.49556 6.63547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.84166 11.0237 4.31299 5.04626 3.74305

CAGE analysis