Hb_000959_240

Information

Type transcription factor
Description TF Family: ERF
Location Contig959: 214224-215826
Sequence    

Annotation

kegg
ID rcu:RCOM_0131910
description DNA binding protein, putative
nr
ID XP_002532770.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FGF8
description Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1
trembl
ID B9T3F1
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0131910 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63661: 214062-215607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_240 0.0 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
2 Hb_008725_220 0.0623657837 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
3 Hb_007858_020 0.074809368 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
4 Hb_005054_330 0.0757189198 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
5 Hb_167186_010 0.0795528107 - - cation-transporting atpase plant, putative [Ricinus communis]
6 Hb_101437_010 0.0824817672 - - PREDICTED: protein P21-like [Jatropha curcas]
7 Hb_000025_490 0.0880876364 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
8 Hb_004032_220 0.1034919923 - - Calmodulin, putative [Ricinus communis]
9 Hb_001153_250 0.1044638318 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
10 Hb_120011_010 0.113655811 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_074672_010 0.1188297336 - - receptor serine/threonine kinase, putative [Ricinus communis]
12 Hb_004899_010 0.1195246857 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
13 Hb_000627_130 0.12070233 - - Polcalcin Jun o, putative [Ricinus communis]
14 Hb_001310_010 0.1227634678 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
15 Hb_002119_030 0.1229082318 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
16 Hb_003207_230 0.1243329106 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
17 Hb_001515_040 0.124891426 - - -
18 Hb_000164_160 0.1269102143 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
19 Hb_001619_140 0.1290422977 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
20 Hb_006615_060 0.1310272592 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000959_240 Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_000959_240--Hb_008725_220 Hb_007858_020 Hb_007858_020 Hb_000959_240--Hb_007858_020 Hb_005054_330 Hb_005054_330 Hb_000959_240--Hb_005054_330 Hb_167186_010 Hb_167186_010 Hb_000959_240--Hb_167186_010 Hb_101437_010 Hb_101437_010 Hb_000959_240--Hb_101437_010 Hb_000025_490 Hb_000025_490 Hb_000959_240--Hb_000025_490 Hb_008725_220--Hb_000025_490 Hb_008725_220--Hb_005054_330 Hb_008725_220--Hb_167186_010 Hb_008725_220--Hb_101437_010 Hb_001515_040 Hb_001515_040 Hb_008725_220--Hb_001515_040 Hb_007858_020--Hb_005054_330 Hb_004032_220 Hb_004032_220 Hb_007858_020--Hb_004032_220 Hb_124953_010 Hb_124953_010 Hb_007858_020--Hb_124953_010 Hb_000032_150 Hb_000032_150 Hb_007858_020--Hb_000032_150 Hb_007858_020--Hb_167186_010 Hb_005054_330--Hb_167186_010 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_003207_230 Hb_003207_230 Hb_005054_330--Hb_003207_230 Hb_167186_010--Hb_000025_490 Hb_002119_030 Hb_002119_030 Hb_167186_010--Hb_002119_030 Hb_101437_010--Hb_001515_040 Hb_101437_010--Hb_000025_490 Hb_020367_010 Hb_020367_010 Hb_101437_010--Hb_020367_010 Hb_000433_050 Hb_000433_050 Hb_101437_010--Hb_000433_050 Hb_000025_490--Hb_002119_030 Hb_000025_490--Hb_001515_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0198143 38.9641 27.3354 4.41323 0.0185679 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0453146 0.178213 0.131949 0.228865 1.32055

CAGE analysis