Hb_000959_270

Information

Type -
Description -
Location Contig959: 235119-241826
Sequence    

Annotation

kegg
ID pmum:103339895
description uncharacterized LOC103339895
nr
ID XP_012080836.1
description PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K340
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16201 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63667: 235158-241846
cDNA
(Sanger)
(ID:Location)		 014_J02.ab1: 235158-237115 , 030_H01.ab1: 235158-237114 , 035_F03.ab1: 235158-241609 , 051_D02.ab1: 235158-236970

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_270 0.0 - - PREDICTED: uncharacterized protein LOC105641005 [Jatropha curcas]
2 Hb_000732_120 0.0681608085 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
3 Hb_033153_070 0.0725387707 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
4 Hb_006960_050 0.0729857954 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
5 Hb_000785_030 0.0757076636 - - hypothetical protein RCOM_0808030 [Ricinus communis]
6 Hb_008511_030 0.0804319248 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
7 Hb_004631_180 0.0805543188 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
8 Hb_000334_270 0.0809418284 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_002942_050 0.0839279701 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
10 Hb_009222_010 0.0841050982 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_106552_050 0.0841606388 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
12 Hb_003605_130 0.0843688465 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
13 Hb_003371_150 0.0847949457 - - PREDICTED: serine/threonine-protein kinase 10 [Jatropha curcas]
14 Hb_000261_250 0.0850227214 - - elongation factor 1-alpha [Lepidium sativum]
15 Hb_010068_040 0.0859065459 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
16 Hb_002157_260 0.0866725008 - - PREDICTED: partner of Y14 and mago-like [Jatropha curcas]
17 Hb_000832_090 0.0868911705 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
18 Hb_003029_030 0.0872224685 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
19 Hb_021422_010 0.0873764545 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial [Jatropha curcas]
20 Hb_001051_080 0.0876293613 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000959_270 Hb_000959_270 Hb_000732_120 Hb_000732_120 Hb_000959_270--Hb_000732_120 Hb_033153_070 Hb_033153_070 Hb_000959_270--Hb_033153_070 Hb_006960_050 Hb_006960_050 Hb_000959_270--Hb_006960_050 Hb_000785_030 Hb_000785_030 Hb_000959_270--Hb_000785_030 Hb_008511_030 Hb_008511_030 Hb_000959_270--Hb_008511_030 Hb_004631_180 Hb_004631_180 Hb_000959_270--Hb_004631_180 Hb_005489_080 Hb_005489_080 Hb_000732_120--Hb_005489_080 Hb_000832_090 Hb_000832_090 Hb_000732_120--Hb_000832_090 Hb_031527_020 Hb_031527_020 Hb_000732_120--Hb_031527_020 Hb_111198_010 Hb_111198_010 Hb_000732_120--Hb_111198_010 Hb_004970_090 Hb_004970_090 Hb_000732_120--Hb_004970_090 Hb_010068_040 Hb_010068_040 Hb_033153_070--Hb_010068_040 Hb_000334_270 Hb_000334_270 Hb_033153_070--Hb_000334_270 Hb_000649_070 Hb_000649_070 Hb_033153_070--Hb_000649_070 Hb_033720_010 Hb_033720_010 Hb_033153_070--Hb_033720_010 Hb_002175_030 Hb_002175_030 Hb_033153_070--Hb_002175_030 Hb_006960_050--Hb_000649_070 Hb_004055_150 Hb_004055_150 Hb_006960_050--Hb_004055_150 Hb_004785_100 Hb_004785_100 Hb_006960_050--Hb_004785_100 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_002686_250 Hb_002686_250 Hb_006960_050--Hb_002686_250 Hb_000392_050 Hb_000392_050 Hb_000785_030--Hb_000392_050 Hb_009222_010 Hb_009222_010 Hb_000785_030--Hb_009222_010 Hb_002942_050 Hb_002942_050 Hb_000785_030--Hb_002942_050 Hb_001910_020 Hb_001910_020 Hb_000785_030--Hb_001910_020 Hb_000059_140 Hb_000059_140 Hb_000785_030--Hb_000059_140 Hb_008511_030--Hb_031527_020 Hb_008511_030--Hb_005489_080 Hb_000457_050 Hb_000457_050 Hb_008511_030--Hb_000457_050 Hb_000140_080 Hb_000140_080 Hb_008511_030--Hb_000140_080 Hb_033095_020 Hb_033095_020 Hb_008511_030--Hb_033095_020 Hb_006916_040 Hb_006916_040 Hb_004631_180--Hb_006916_040 Hb_000576_020 Hb_000576_020 Hb_004631_180--Hb_000576_020 Hb_001051_080 Hb_001051_080 Hb_004631_180--Hb_001051_080 Hb_000120_430 Hb_000120_430 Hb_004631_180--Hb_000120_430 Hb_000256_190 Hb_000256_190 Hb_004631_180--Hb_000256_190 Hb_002235_210 Hb_002235_210 Hb_004631_180--Hb_002235_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.1362 55.8517 54.2322 44.6067 84.2186 73.1975
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.5151 60.4142 27.5462 29.5804 25.1691

CAGE analysis