Hb_000959_300

Information

Type -
Description -
Location Contig959: 262127-269918
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07120g
description POPTRDRAFT_819877A, POPTRDRAFT_819877B; cellulose synthase family protein
nr
ID XP_012075293.1
description PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
swissprot
ID Q94JQ6
description Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2
trembl
ID A0A067KGS5
description Cellulose synthase OS=Jatropha curcas GN=JCGZ_09461 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase a catalytic subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63669: 262099-269894 , PASA_asmbl_63672: 269984-270324
cDNA
(Sanger)
(ID:Location)		 011_F09.ab1: 267985-269894 , 012_J20.ab1: 268002-269894

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_300 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
2 Hb_002488_010 0.0794481204 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
3 Hb_001411_130 0.0895865915 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
4 Hb_001969_140 0.0914648203 - - PREDICTED: uncharacterized protein LOC105634929 [Jatropha curcas]
5 Hb_002942_230 0.0933254532 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
6 Hb_003847_040 0.0964304067 - - adenosine diphosphatase, putative [Ricinus communis]
7 Hb_000167_040 0.1010940381 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]
8 Hb_000977_290 0.1050434745 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
9 Hb_014497_010 0.1081049558 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
10 Hb_003540_080 0.1105474608 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_002053_050 0.1107965822 - - Kinesin heavy chain, putative [Ricinus communis]
12 Hb_026549_070 0.111827875 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
13 Hb_000866_070 0.1121014757 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
14 Hb_000997_070 0.1129032921 - - PREDICTED: ureidoglycolate hydrolase isoform X1 [Jatropha curcas]
15 Hb_010984_020 0.1141420626 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
16 Hb_002217_080 0.1150539802 - - PREDICTED: probable beta-1,3-galactosyltransferase 16 [Jatropha curcas]
17 Hb_004052_180 0.1155299152 - - PREDICTED: protein COBRA-like [Jatropha curcas]
18 Hb_008025_010 0.1178537539 - - PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis]
19 Hb_004899_340 0.1182026134 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
20 Hb_003680_030 0.1196196703 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_300 Hb_000959_300 Hb_002488_010 Hb_002488_010 Hb_000959_300--Hb_002488_010 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_001969_140 Hb_001969_140 Hb_000959_300--Hb_001969_140 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040 Hb_000968_060 Hb_000968_060 Hb_002488_010--Hb_000968_060 Hb_000866_070 Hb_000866_070 Hb_002488_010--Hb_000866_070 Hb_012762_060 Hb_012762_060 Hb_002488_010--Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_002488_010--Hb_003680_030 Hb_002900_150 Hb_002900_150 Hb_002488_010--Hb_002900_150 Hb_001411_130--Hb_002942_230 Hb_001279_020 Hb_001279_020 Hb_001411_130--Hb_001279_020 Hb_001411_130--Hb_003847_040 Hb_002217_080 Hb_002217_080 Hb_001411_130--Hb_002217_080 Hb_029552_020 Hb_029552_020 Hb_001411_130--Hb_029552_020 Hb_001195_310 Hb_001195_310 Hb_001969_140--Hb_001195_310 Hb_001969_140--Hb_000167_040 Hb_001216_110 Hb_001216_110 Hb_001969_140--Hb_001216_110 Hb_000679_040 Hb_000679_040 Hb_001969_140--Hb_000679_040 Hb_011310_050 Hb_011310_050 Hb_001969_140--Hb_011310_050 Hb_002942_230--Hb_002217_080 Hb_002942_230--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_002942_230--Hb_000001_090 Hb_002687_200 Hb_002687_200 Hb_002942_230--Hb_002687_200 Hb_003540_080 Hb_003540_080 Hb_002942_230--Hb_003540_080 Hb_000638_060 Hb_000638_060 Hb_003847_040--Hb_000638_060 Hb_026549_070 Hb_026549_070 Hb_003847_040--Hb_026549_070 Hb_001195_660 Hb_001195_660 Hb_003847_040--Hb_001195_660 Hb_000414_080 Hb_000414_080 Hb_003847_040--Hb_000414_080 Hb_000167_040--Hb_011310_050 Hb_000167_040--Hb_001195_310 Hb_000997_070 Hb_000997_070 Hb_000167_040--Hb_000997_070 Hb_000167_040--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_000167_040--Hb_010381_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9582 23.3991 65.3129 93.7091 23.1604 21.9097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.41679 4.65698 10.5889 24.9749 77.0798

CAGE analysis