Hb_000959_350

Information

Type -
Description -
Location Contig959: 314212-321720
Sequence    

Annotation

kegg
ID tcc:TCM_001346
description Chaperone DnaJ-domain superfamily protein, putative
nr
ID XP_012075314.1
description PREDICTED: uncharacterized protein LOC105636607 [Jatropha curcas]
swissprot
ID Q8NHS0
description DnaJ homolog subfamily B member 8 OS=Homo sapiens GN=DNAJB8 PE=1 SV=1
trembl
ID A0A067KSS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09484 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63675: 314197-315441 , PASA_asmbl_63676: 316648-321673
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_350 0.0 - - PREDICTED: uncharacterized protein LOC105636607 [Jatropha curcas]
2 Hb_005551_040 0.0994127375 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
3 Hb_002540_080 0.0997835084 - - cysteine-type peptidase, putative [Ricinus communis]
4 Hb_002871_190 0.1048530101 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
5 Hb_034380_020 0.1051498508 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
6 Hb_002014_030 0.1079422102 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
7 Hb_011689_120 0.1098952194 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
8 Hb_004889_020 0.1117747469 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
9 Hb_000566_120 0.1134789986 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
10 Hb_003622_030 0.1136889588 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
11 Hb_024650_070 0.1148789196 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
12 Hb_012799_170 0.1154247948 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
13 Hb_000174_030 0.1159438628 - - hypothetical protein RCOM_1077370 [Ricinus communis]
14 Hb_000107_150 0.1159921632 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
15 Hb_004889_010 0.117882521 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
16 Hb_000733_180 0.1189736244 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]
17 Hb_001322_110 0.1190974785 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008841_020 0.1192011375 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
19 Hb_010361_010 0.1194792351 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
20 Hb_002503_020 0.1196682419 - - Phosphatase 2C family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000959_350 Hb_000959_350 Hb_005551_040 Hb_005551_040 Hb_000959_350--Hb_005551_040 Hb_002540_080 Hb_002540_080 Hb_000959_350--Hb_002540_080 Hb_002871_190 Hb_002871_190 Hb_000959_350--Hb_002871_190 Hb_034380_020 Hb_034380_020 Hb_000959_350--Hb_034380_020 Hb_002014_030 Hb_002014_030 Hb_000959_350--Hb_002014_030 Hb_011689_120 Hb_011689_120 Hb_000959_350--Hb_011689_120 Hb_004889_010 Hb_004889_010 Hb_005551_040--Hb_004889_010 Hb_005551_040--Hb_034380_020 Hb_024650_070 Hb_024650_070 Hb_005551_040--Hb_024650_070 Hb_007676_080 Hb_007676_080 Hb_005551_040--Hb_007676_080 Hb_010361_010 Hb_010361_010 Hb_005551_040--Hb_010361_010 Hb_002014_020 Hb_002014_020 Hb_005551_040--Hb_002014_020 Hb_003622_030 Hb_003622_030 Hb_002540_080--Hb_003622_030 Hb_000676_390 Hb_000676_390 Hb_002540_080--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_002540_080--Hb_026889_030 Hb_012799_170 Hb_012799_170 Hb_002540_080--Hb_012799_170 Hb_000160_180 Hb_000160_180 Hb_002540_080--Hb_000160_180 Hb_001318_260 Hb_001318_260 Hb_002540_080--Hb_001318_260 Hb_003728_060 Hb_003728_060 Hb_002871_190--Hb_003728_060 Hb_002871_190--Hb_026889_030 Hb_050514_010 Hb_050514_010 Hb_002871_190--Hb_050514_010 Hb_002871_190--Hb_010361_010 Hb_002600_090 Hb_002600_090 Hb_002871_190--Hb_002600_090 Hb_000827_050 Hb_000827_050 Hb_002871_190--Hb_000827_050 Hb_034380_020--Hb_004889_010 Hb_001489_080 Hb_001489_080 Hb_034380_020--Hb_001489_080 Hb_034380_020--Hb_002014_020 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_003697_040 Hb_003697_040 Hb_034380_020--Hb_003697_040 Hb_001366_180 Hb_001366_180 Hb_002014_030--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_002014_030--Hb_006274_030 Hb_000289_110 Hb_000289_110 Hb_002014_030--Hb_000289_110 Hb_017987_030 Hb_017987_030 Hb_002014_030--Hb_017987_030 Hb_002811_130 Hb_002811_130 Hb_002014_030--Hb_002811_130 Hb_018272_020 Hb_018272_020 Hb_002014_030--Hb_018272_020 Hb_006846_150 Hb_006846_150 Hb_011689_120--Hb_006846_150 Hb_001322_110 Hb_001322_110 Hb_011689_120--Hb_001322_110 Hb_000403_070 Hb_000403_070 Hb_011689_120--Hb_000403_070 Hb_002872_050 Hb_002872_050 Hb_011689_120--Hb_002872_050 Hb_000811_070 Hb_000811_070 Hb_011689_120--Hb_000811_070 Hb_011689_120--Hb_001318_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28405 1.07321 5.63185 4.10645 1.34605 4.88183
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.67206 7.77316 5.96966 3.66379 5.87661

CAGE analysis