Hb_000959_370

Information

Type -
Description -
Location Contig959: 360038-362249
Sequence    

Annotation

kegg
ID rcu:RCOM_0766900
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_012075360.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID B9T536
description Terpene synthase 10 OS=Ricinus communis GN=TPS10 PE=2 SV=1
trembl
ID A0A067KK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09482 PE=4 SV=1
Gene Ontology
ID GO:0000287
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63680: 361264-361616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_370 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_006013_030 0.0915557562 - - -
3 Hb_032299_070 0.1223017787 - - -
4 Hb_002733_050 0.127310626 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000600_080 0.1395841439 - - -
6 Hb_000280_120 0.1401088384 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
7 Hb_072173_010 0.1402516584 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
8 Hb_044313_010 0.14027523 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002997_050 0.145743403 - - PREDICTED: receptor-like protein 12 isoform X4 [Populus euphratica]
10 Hb_011242_070 0.1486994284 - - beta-cyanoalanine synthase [Hevea brasiliensis]
11 Hb_114121_010 0.1530252721 - - -
12 Hb_028872_040 0.1583504374 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_138667_010 0.1589707803 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
14 Hb_002142_010 0.1593721215 - - conserved hypothetical protein [Ricinus communis]
15 Hb_168909_010 0.1607618936 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
16 Hb_019641_020 0.1665413189 - - hypothetical protein AALP_AAs49670U000100, partial [Arabis alpina]
17 Hb_110782_010 0.1725079671 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
18 Hb_000243_050 0.1747517141 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_020400_010 0.1807177329 - - PREDICTED: uncharacterized protein LOC105644073 [Jatropha curcas]
20 Hb_131320_010 0.184100162 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_370 Hb_000959_370 Hb_006013_030 Hb_006013_030 Hb_000959_370--Hb_006013_030 Hb_032299_070 Hb_032299_070 Hb_000959_370--Hb_032299_070 Hb_002733_050 Hb_002733_050 Hb_000959_370--Hb_002733_050 Hb_000600_080 Hb_000600_080 Hb_000959_370--Hb_000600_080 Hb_000280_120 Hb_000280_120 Hb_000959_370--Hb_000280_120 Hb_072173_010 Hb_072173_010 Hb_000959_370--Hb_072173_010 Hb_006013_030--Hb_002733_050 Hb_114121_010 Hb_114121_010 Hb_006013_030--Hb_114121_010 Hb_006013_030--Hb_000280_120 Hb_168909_010 Hb_168909_010 Hb_006013_030--Hb_168909_010 Hb_020400_010 Hb_020400_010 Hb_006013_030--Hb_020400_010 Hb_044313_010 Hb_044313_010 Hb_032299_070--Hb_044313_010 Hb_005618_110 Hb_005618_110 Hb_032299_070--Hb_005618_110 Hb_002142_010 Hb_002142_010 Hb_032299_070--Hb_002142_010 Hb_032299_070--Hb_006013_030 Hb_011242_070 Hb_011242_070 Hb_032299_070--Hb_011242_070 Hb_002733_050--Hb_114121_010 Hb_002733_050--Hb_168909_010 Hb_008755_020 Hb_008755_020 Hb_002733_050--Hb_008755_020 Hb_002733_050--Hb_000280_120 Hb_002733_050--Hb_020400_010 Hb_000685_140 Hb_000685_140 Hb_000600_080--Hb_000685_140 Hb_000600_080--Hb_072173_010 Hb_001411_100 Hb_001411_100 Hb_000600_080--Hb_001411_100 Hb_000101_320 Hb_000101_320 Hb_000600_080--Hb_000101_320 Hb_031949_010 Hb_031949_010 Hb_000600_080--Hb_031949_010 Hb_138667_010 Hb_138667_010 Hb_000280_120--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_000280_120--Hb_000243_050 Hb_000280_120--Hb_168909_010 Hb_028872_040 Hb_028872_040 Hb_000280_120--Hb_028872_040 Hb_003938_100 Hb_003938_100 Hb_000280_120--Hb_003938_100 Hb_072173_010--Hb_000101_320 Hb_072173_010--Hb_000685_140 Hb_008834_010 Hb_008834_010 Hb_072173_010--Hb_008834_010 Hb_072173_010--Hb_002733_050 Hb_072173_010--Hb_114121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.22005 0.0214585 0.0869549 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.38481 3.56081

CAGE analysis