Hb_000960_020

Information

Type -
Description -
Location Contig960: 3207-3440
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_020 0.0 - - -
2 Hb_003906_030 0.1280521743 - - mads box protein, putative [Ricinus communis]
3 Hb_008092_030 0.2104987846 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
4 Hb_091336_010 0.2216357376 - - -
5 Hb_178711_010 0.2284302841 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
6 Hb_022534_010 0.2298884396 - - hypothetical protein CICLE_v10000066mg [Citrus clementina]
7 Hb_000304_040 0.2384175362 - - PREDICTED: nicotianamine synthase-like [Jatropha curcas]
8 Hb_005127_040 0.2396449111 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
9 Hb_035761_010 0.2448164674 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
10 Hb_187697_010 0.2454725109 - - TMV resistance protein N, putative [Ricinus communis]
11 Hb_000029_280 0.250295637 - - PREDICTED: uncharacterized protein LOC105631804 [Jatropha curcas]
12 Hb_004458_010 0.2509958872 - - PREDICTED: RING-H2 finger protein ATL78-like [Jatropha curcas]
13 Hb_003925_130 0.2561213014 - - glutathione s-transferase, putative [Ricinus communis]
14 Hb_029622_070 0.2563611994 - - -
15 Hb_000936_040 0.2609338135 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
16 Hb_001414_120 0.2626431083 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
17 Hb_025595_010 0.2671959809 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
18 Hb_004611_060 0.2707223402 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
19 Hb_127404_010 0.2731959655 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X1 [Gossypium raimondii]
20 Hb_000668_170 0.2750481823 - - sulfate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000960_020 Hb_000960_020 Hb_003906_030 Hb_003906_030 Hb_000960_020--Hb_003906_030 Hb_008092_030 Hb_008092_030 Hb_000960_020--Hb_008092_030 Hb_091336_010 Hb_091336_010 Hb_000960_020--Hb_091336_010 Hb_178711_010 Hb_178711_010 Hb_000960_020--Hb_178711_010 Hb_022534_010 Hb_022534_010 Hb_000960_020--Hb_022534_010 Hb_000304_040 Hb_000304_040 Hb_000960_020--Hb_000304_040 Hb_003906_030--Hb_091336_010 Hb_007545_200 Hb_007545_200 Hb_003906_030--Hb_007545_200 Hb_003925_130 Hb_003925_130 Hb_003906_030--Hb_003925_130 Hb_003906_030--Hb_000304_040 Hb_020805_160 Hb_020805_160 Hb_003906_030--Hb_020805_160 Hb_187697_010 Hb_187697_010 Hb_008092_030--Hb_187697_010 Hb_007304_100 Hb_007304_100 Hb_008092_030--Hb_007304_100 Hb_008092_030--Hb_022534_010 Hb_000805_330 Hb_000805_330 Hb_008092_030--Hb_000805_330 Hb_000099_190 Hb_000099_190 Hb_008092_030--Hb_000099_190 Hb_158349_010 Hb_158349_010 Hb_091336_010--Hb_158349_010 Hb_003602_080 Hb_003602_080 Hb_091336_010--Hb_003602_080 Hb_010012_020 Hb_010012_020 Hb_091336_010--Hb_010012_020 Hb_000668_170 Hb_000668_170 Hb_091336_010--Hb_000668_170 Hb_000203_090 Hb_000203_090 Hb_091336_010--Hb_000203_090 Hb_029622_070 Hb_029622_070 Hb_178711_010--Hb_029622_070 Hb_003531_010 Hb_003531_010 Hb_178711_010--Hb_003531_010 Hb_178711_010--Hb_003925_130 Hb_178711_010--Hb_000304_040 Hb_002081_180 Hb_002081_180 Hb_178711_010--Hb_002081_180 Hb_048183_010 Hb_048183_010 Hb_178711_010--Hb_048183_010 Hb_127404_010 Hb_127404_010 Hb_022534_010--Hb_127404_010 Hb_022534_010--Hb_187697_010 Hb_003637_020 Hb_003637_020 Hb_022534_010--Hb_003637_020 Hb_001178_040 Hb_001178_040 Hb_022534_010--Hb_001178_040 Hb_001414_120 Hb_001414_120 Hb_000304_040--Hb_001414_120 Hb_004458_010 Hb_004458_010 Hb_000304_040--Hb_004458_010 Hb_000304_040--Hb_003925_130 Hb_001957_050 Hb_001957_050 Hb_000304_040--Hb_001957_050 Hb_000769_050 Hb_000769_050 Hb_000304_040--Hb_000769_050 Hb_000373_110 Hb_000373_110 Hb_000304_040--Hb_000373_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.39699 40.807 3.55716 42.5607 0 11.0965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43081 0 0 0 0

CAGE analysis