Hb_000960_040

Information

Type -
Description -
Location Contig960: 18238-24033
Sequence    

Annotation

kegg
ID vvi:100252838
description ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
nr
ID XP_010662120.1
description PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
swissprot
ID Q9LW77
description ERAD-associated E3 ubiquitin-protein ligase HRD1A OS=Arabidopsis thaliana GN=HRD1A PE=2 SV=1
trembl
ID F6HEG3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g02200 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase synoviolin-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63706: 18438-18548 , PASA_asmbl_63707: 23608-23832
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_040 0.0 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
2 Hb_000004_030 0.065301764 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
3 Hb_000264_350 0.0664342325 - - PREDICTED: uncharacterized protein LOC105649541 [Jatropha curcas]
4 Hb_008511_020 0.0725949348 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
5 Hb_000667_030 0.0742433137 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
6 Hb_002675_030 0.0776194505 - - coatomer beta subunit, putative [Ricinus communis]
7 Hb_010294_010 0.0785779478 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
8 Hb_005215_010 0.0802021948 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
9 Hb_008484_060 0.0806638718 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
10 Hb_012760_100 0.0825731158 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
11 Hb_001109_060 0.0835835883 - - amino acid transporter, putative [Ricinus communis]
12 Hb_162275_040 0.0837776977 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000130_180 0.0851640969 - - PREDICTED: GPI inositol-deacylase-like isoform X2 [Jatropha curcas]
14 Hb_000086_440 0.0854284851 - - PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Jatropha curcas]
15 Hb_001440_020 0.0864259978 - - exocyst componenet sec8, putative [Ricinus communis]
16 Hb_001821_150 0.0885983371 - - PREDICTED: potassium transporter 7-like [Jatropha curcas]
17 Hb_000035_170 0.0889487807 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
18 Hb_006501_090 0.0892176483 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
19 Hb_002785_050 0.0894972254 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
20 Hb_000317_100 0.0903542701 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]

Gene co-expression network

sample Hb_000960_040 Hb_000960_040 Hb_000004_030 Hb_000004_030 Hb_000960_040--Hb_000004_030 Hb_000264_350 Hb_000264_350 Hb_000960_040--Hb_000264_350 Hb_008511_020 Hb_008511_020 Hb_000960_040--Hb_008511_020 Hb_000667_030 Hb_000667_030 Hb_000960_040--Hb_000667_030 Hb_002675_030 Hb_002675_030 Hb_000960_040--Hb_002675_030 Hb_010294_010 Hb_010294_010 Hb_000960_040--Hb_010294_010 Hb_000004_030--Hb_000264_350 Hb_041828_010 Hb_041828_010 Hb_000004_030--Hb_041828_010 Hb_002391_290 Hb_002391_290 Hb_000004_030--Hb_002391_290 Hb_004659_020 Hb_004659_020 Hb_000004_030--Hb_004659_020 Hb_001862_140 Hb_001862_140 Hb_000004_030--Hb_001862_140 Hb_000579_240 Hb_000579_240 Hb_000264_350--Hb_000579_240 Hb_000264_350--Hb_002675_030 Hb_000183_050 Hb_000183_050 Hb_000264_350--Hb_000183_050 Hb_001821_150 Hb_001821_150 Hb_000264_350--Hb_001821_150 Hb_008511_020--Hb_002675_030 Hb_001440_020 Hb_001440_020 Hb_008511_020--Hb_001440_020 Hb_002027_080 Hb_002027_080 Hb_008511_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_000667_030--Hb_010294_010 Hb_005215_010 Hb_005215_010 Hb_000667_030--Hb_005215_010 Hb_012518_070 Hb_012518_070 Hb_000667_030--Hb_012518_070 Hb_021297_050 Hb_021297_050 Hb_000667_030--Hb_021297_050 Hb_000494_050 Hb_000494_050 Hb_000667_030--Hb_000494_050 Hb_000317_100 Hb_000317_100 Hb_000667_030--Hb_000317_100 Hb_002675_030--Hb_001440_020 Hb_002675_030--Hb_000579_240 Hb_002675_030--Hb_001821_150 Hb_002301_300 Hb_002301_300 Hb_010294_010--Hb_002301_300 Hb_002026_150 Hb_002026_150 Hb_010294_010--Hb_002026_150 Hb_011228_010 Hb_011228_010 Hb_010294_010--Hb_011228_010 Hb_012330_010 Hb_012330_010 Hb_010294_010--Hb_012330_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.99796 12.6348 13.5239 23.0393 19.929 21.1372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.83152 7.75438 11.1958 17.9203 21.7569

CAGE analysis