Hb_000960_060

Information

Type -
Description -
Location Contig960: 63493-73571
Sequence    

Annotation

kegg
ID rcu:RCOM_1324490
description ADP-ribosylation factor, arf, putative
nr
ID XP_012090923.1
description PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
swissprot
ID P34727
description ADP-ribosylation factor OS=Ajellomyces capsulatus GN=ARF PE=1 SV=3
trembl
ID A0A067JP61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00572 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor 1-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63710: 63516-73490 , PASA_asmbl_63711: 63516-73009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_060 0.0 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
2 Hb_005731_050 0.0524026774 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
3 Hb_003428_030 0.0682993702 - - tRNA, putative [Ricinus communis]
4 Hb_033594_120 0.0740114049 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
5 Hb_001828_190 0.0758094752 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
6 Hb_028227_020 0.0776387283 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
7 Hb_000093_160 0.0781531725 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
8 Hb_001234_080 0.0785731265 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
9 Hb_002739_050 0.0800708768 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X2 [Jatropha curcas]
10 Hb_005618_160 0.0800865352 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
11 Hb_001935_130 0.0815926211 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
12 Hb_024071_020 0.083069744 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
13 Hb_000120_790 0.0835816587 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
14 Hb_007672_060 0.0838611471 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
15 Hb_001140_370 0.0843903198 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
16 Hb_001579_270 0.0847681913 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
17 Hb_003030_070 0.0850210635 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
18 Hb_001489_060 0.0855794158 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
19 Hb_003929_250 0.0858585205 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
20 Hb_000054_090 0.0860643626 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000960_060 Hb_000960_060 Hb_005731_050 Hb_005731_050 Hb_000960_060--Hb_005731_050 Hb_003428_030 Hb_003428_030 Hb_000960_060--Hb_003428_030 Hb_033594_120 Hb_033594_120 Hb_000960_060--Hb_033594_120 Hb_001828_190 Hb_001828_190 Hb_000960_060--Hb_001828_190 Hb_028227_020 Hb_028227_020 Hb_000960_060--Hb_028227_020 Hb_000093_160 Hb_000093_160 Hb_000960_060--Hb_000093_160 Hb_004108_070 Hb_004108_070 Hb_005731_050--Hb_004108_070 Hb_000111_380 Hb_000111_380 Hb_005731_050--Hb_000111_380 Hb_002863_050 Hb_002863_050 Hb_005731_050--Hb_002863_050 Hb_005731_050--Hb_033594_120 Hb_005731_050--Hb_003428_030 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_000032_270 Hb_000032_270 Hb_003428_030--Hb_000032_270 Hb_003633_030 Hb_003633_030 Hb_033594_120--Hb_003633_030 Hb_001252_130 Hb_001252_130 Hb_033594_120--Hb_001252_130 Hb_000421_220 Hb_000421_220 Hb_033594_120--Hb_000421_220 Hb_000054_090 Hb_000054_090 Hb_033594_120--Hb_000054_090 Hb_002473_130 Hb_002473_130 Hb_033594_120--Hb_002473_130 Hb_001090_040 Hb_001090_040 Hb_001828_190--Hb_001090_040 Hb_007017_030 Hb_007017_030 Hb_001828_190--Hb_007017_030 Hb_001828_190--Hb_003525_010 Hb_002226_070 Hb_002226_070 Hb_001828_190--Hb_002226_070 Hb_001828_190--Hb_007691_030 Hb_000092_170 Hb_000092_170 Hb_001828_190--Hb_000092_170 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_005697_060 Hb_005697_060 Hb_028227_020--Hb_005697_060 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_003010_030 Hb_003010_030 Hb_000093_160--Hb_003010_030 Hb_096563_010 Hb_096563_010 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000093_160--Hb_000120_790 Hb_001258_090 Hb_001258_090 Hb_000093_160--Hb_001258_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.585 8.40622 11.8637 18.5235 23.1165 23.2126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.0134 29.2328 12.2487 11.3508 10.3094

CAGE analysis