Hb_000960_070

Information

Type -
Description -
Location Contig960: 73862-87995
Sequence    

Annotation

kegg
ID pmum:103321395
description uncharacterized LOC103321395
nr
ID XP_010926849.1
description PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
swissprot
ID -
description -
trembl
ID A5BJ98
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_070 0.0 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
2 Hb_000069_090 0.1846211786 - - neutral/alkaline invertase [Manihot esculenta]
3 Hb_001486_150 0.1975297612 - - -
4 Hb_001437_020 0.2093948309 - - PREDICTED: uncharacterized protein LOC105628060 isoform X2 [Jatropha curcas]
5 Hb_000625_110 0.2334601864 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
6 Hb_000825_040 0.2411979357 - - catalytic, putative [Ricinus communis]
7 Hb_006829_050 0.2497488939 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
8 Hb_084611_010 0.2695285427 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
9 Hb_000849_110 0.2716918014 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
10 Hb_000117_170 0.2743792102 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
11 Hb_126907_010 0.2777323533 - - -
12 Hb_000281_170 0.2871414119 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_005725_190 0.2885075662 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
14 Hb_002701_140 0.2891324269 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
15 Hb_003442_050 0.292405903 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
16 Hb_000277_020 0.2979770846 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
17 Hb_046117_040 0.3019073801 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
18 Hb_002211_040 0.3020624774 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
19 Hb_000940_020 0.3047380121 - - hypothetical protein POPTR_0004s17500g [Populus trichocarpa]
20 Hb_000417_290 0.3072371119 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000960_070 Hb_000960_070 Hb_000069_090 Hb_000069_090 Hb_000960_070--Hb_000069_090 Hb_001486_150 Hb_001486_150 Hb_000960_070--Hb_001486_150 Hb_001437_020 Hb_001437_020 Hb_000960_070--Hb_001437_020 Hb_000625_110 Hb_000625_110 Hb_000960_070--Hb_000625_110 Hb_000825_040 Hb_000825_040 Hb_000960_070--Hb_000825_040 Hb_006829_050 Hb_006829_050 Hb_000960_070--Hb_006829_050 Hb_000069_090--Hb_001486_150 Hb_124302_030 Hb_124302_030 Hb_000069_090--Hb_124302_030 Hb_003175_020 Hb_003175_020 Hb_000069_090--Hb_003175_020 Hb_000699_190 Hb_000699_190 Hb_000069_090--Hb_000699_190 Hb_025194_010 Hb_025194_010 Hb_000069_090--Hb_025194_010 Hb_010921_090 Hb_010921_090 Hb_001486_150--Hb_010921_090 Hb_000111_300 Hb_000111_300 Hb_001486_150--Hb_000111_300 Hb_001863_100 Hb_001863_100 Hb_001486_150--Hb_001863_100 Hb_133636_010 Hb_133636_010 Hb_001486_150--Hb_133636_010 Hb_002608_020 Hb_002608_020 Hb_001437_020--Hb_002608_020 Hb_002257_020 Hb_002257_020 Hb_001437_020--Hb_002257_020 Hb_126907_010 Hb_126907_010 Hb_001437_020--Hb_126907_010 Hb_084611_010 Hb_084611_010 Hb_001437_020--Hb_084611_010 Hb_000014_140 Hb_000014_140 Hb_001437_020--Hb_000014_140 Hb_002417_030 Hb_002417_030 Hb_000625_110--Hb_002417_030 Hb_038758_010 Hb_038758_010 Hb_000625_110--Hb_038758_010 Hb_000142_020 Hb_000142_020 Hb_000625_110--Hb_000142_020 Hb_003100_010 Hb_003100_010 Hb_000625_110--Hb_003100_010 Hb_006198_170 Hb_006198_170 Hb_000625_110--Hb_006198_170 Hb_011689_140 Hb_011689_140 Hb_000625_110--Hb_011689_140 Hb_002701_140 Hb_002701_140 Hb_000825_040--Hb_002701_140 Hb_000277_020 Hb_000277_020 Hb_000825_040--Hb_000277_020 Hb_006351_080 Hb_006351_080 Hb_000825_040--Hb_006351_080 Hb_119441_010 Hb_119441_010 Hb_000825_040--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000825_040--Hb_000369_150 Hb_000940_020 Hb_000940_020 Hb_000825_040--Hb_000940_020 Hb_058325_010 Hb_058325_010 Hb_006829_050--Hb_058325_010 Hb_001248_110 Hb_001248_110 Hb_006829_050--Hb_001248_110 Hb_000792_060 Hb_000792_060 Hb_006829_050--Hb_000792_060 Hb_000544_020 Hb_000544_020 Hb_006829_050--Hb_000544_020 Hb_004648_100 Hb_004648_100 Hb_006829_050--Hb_004648_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.126568 0 0.0079887 0 0.0200034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0185172 0 0.022109 0

CAGE analysis