Hb_000960_100

Information

Type -
Description -
Location Contig960: 114081-120610
Sequence    

Annotation

kegg
ID rcu:RCOM_1324390
description hypothetical protein
nr
ID XP_012090936.1
description PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
swissprot
ID P59278
description Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2
trembl
ID A0A067JDA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00579 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63718: 116363-116940 , PASA_asmbl_63720: 120102-120550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000960_100 0.0 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
2 Hb_002615_090 0.0483848108 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
3 Hb_004108_100 0.0512421306 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
4 Hb_002022_070 0.0536072855 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
5 Hb_000025_320 0.05594227 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
6 Hb_002235_300 0.0668083747 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
7 Hb_001235_230 0.0673517898 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
8 Hb_002253_080 0.0673910748 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
9 Hb_128743_010 0.068733226 - - RNA-binding protein, putative [Ricinus communis]
10 Hb_000671_070 0.0720186652 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
11 Hb_002329_040 0.0728485173 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
12 Hb_002301_080 0.0738870676 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
13 Hb_000563_640 0.0739757319 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
14 Hb_000977_120 0.0740093301 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
15 Hb_157966_010 0.0740603684 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
16 Hb_144831_010 0.0743944427 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
17 Hb_001967_030 0.075060117 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_000183_020 0.0759081742 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
19 Hb_007635_030 0.0759391152 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
20 Hb_000406_020 0.0760916197 - - -

Gene co-expression network

sample Hb_000960_100 Hb_000960_100 Hb_002615_090 Hb_002615_090 Hb_000960_100--Hb_002615_090 Hb_004108_100 Hb_004108_100 Hb_000960_100--Hb_004108_100 Hb_002022_070 Hb_002022_070 Hb_000960_100--Hb_002022_070 Hb_000025_320 Hb_000025_320 Hb_000960_100--Hb_000025_320 Hb_002235_300 Hb_002235_300 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002615_090--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_002615_090--Hb_002253_080 Hb_000878_180 Hb_000878_180 Hb_002615_090--Hb_000878_180 Hb_001767_140 Hb_001767_140 Hb_002615_090--Hb_001767_140 Hb_128743_010 Hb_128743_010 Hb_004108_100--Hb_128743_010 Hb_004108_100--Hb_000025_320 Hb_006816_430 Hb_006816_430 Hb_004108_100--Hb_006816_430 Hb_144831_010 Hb_144831_010 Hb_004108_100--Hb_144831_010 Hb_004108_100--Hb_002022_070 Hb_002022_070--Hb_000025_320 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040 Hb_000977_120 Hb_000977_120 Hb_002235_300--Hb_000977_120 Hb_000684_250 Hb_000684_250 Hb_002235_300--Hb_000684_250 Hb_002235_300--Hb_002253_080 Hb_002235_300--Hb_000025_320 Hb_002267_140 Hb_002267_140 Hb_002235_300--Hb_002267_140 Hb_011202_020 Hb_011202_020 Hb_001235_230--Hb_011202_020 Hb_000261_030 Hb_000261_030 Hb_001235_230--Hb_000261_030 Hb_000176_130 Hb_000176_130 Hb_001235_230--Hb_000176_130 Hb_002044_170 Hb_002044_170 Hb_001235_230--Hb_002044_170 Hb_005357_260 Hb_005357_260 Hb_001235_230--Hb_005357_260 Hb_000035_410 Hb_000035_410 Hb_001235_230--Hb_000035_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.89415 13.9145 5.24453 6.21556 12.0518 11.5322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.847 4.19578 7.3693 7.19403 9.14161

CAGE analysis