Hb_000962_010

Information

Type -
Description -
Location Contig962: 12906-14899
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000962_010 0.0 - - -
2 Hb_001385_050 0.1664387967 - - catalytic, putative [Ricinus communis]
3 Hb_001762_070 0.1801925782 - - -
4 Hb_001125_020 0.1887636223 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
5 Hb_000004_140 0.1958031558 - - -
6 Hb_001206_070 0.1994249226 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_022593_060 0.201744328 - - -
8 Hb_010024_010 0.2038503307 - - Ran GTPase binding protein, putative [Ricinus communis]
9 Hb_005839_010 0.2121156312 - - 30S ribosomal protein s13 [Camellia sinensis]
10 Hb_098842_010 0.2141375316 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
11 Hb_000589_320 0.220270883 - - unnamed protein product [Vitis vinifera]
12 Hb_000116_080 0.2219357618 - - PREDICTED: uncharacterized protein LOC104097358 [Nicotiana tomentosiformis]
13 Hb_000115_270 0.226916415 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
14 Hb_001241_060 0.2292984438 - - -
15 Hb_001385_090 0.2326931254 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
16 Hb_042026_010 0.2354051816 - - RNA binding protein, putative [Ricinus communis]
17 Hb_000059_090 0.2405298598 - - -
18 Hb_010997_050 0.2415688771 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
19 Hb_004317_050 0.2424740887 - - -
20 Hb_001454_110 0.2428426727 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]

Gene co-expression network

sample Hb_000962_010 Hb_000962_010 Hb_001385_050 Hb_001385_050 Hb_000962_010--Hb_001385_050 Hb_001762_070 Hb_001762_070 Hb_000962_010--Hb_001762_070 Hb_001125_020 Hb_001125_020 Hb_000962_010--Hb_001125_020 Hb_000004_140 Hb_000004_140 Hb_000962_010--Hb_000004_140 Hb_001206_070 Hb_001206_070 Hb_000962_010--Hb_001206_070 Hb_022593_060 Hb_022593_060 Hb_000962_010--Hb_022593_060 Hb_001385_050--Hb_001125_020 Hb_001385_050--Hb_001206_070 Hb_001385_050--Hb_022593_060 Hb_010024_010 Hb_010024_010 Hb_001385_050--Hb_010024_010 Hb_000116_080 Hb_000116_080 Hb_001385_050--Hb_000116_080 Hb_001241_060 Hb_001241_060 Hb_001385_050--Hb_001241_060 Hb_001762_070--Hb_001385_050 Hb_001762_070--Hb_022593_060 Hb_001762_070--Hb_010024_010 Hb_001762_070--Hb_001206_070 Hb_001762_070--Hb_001241_060 Hb_001125_020--Hb_000116_080 Hb_000696_320 Hb_000696_320 Hb_001125_020--Hb_000696_320 Hb_001125_020--Hb_001206_070 Hb_000833_080 Hb_000833_080 Hb_001125_020--Hb_000833_080 Hb_000005_210 Hb_000005_210 Hb_001125_020--Hb_000005_210 Hb_010997_050 Hb_010997_050 Hb_000004_140--Hb_010997_050 Hb_098842_010 Hb_098842_010 Hb_000004_140--Hb_098842_010 Hb_004282_030 Hb_004282_030 Hb_000004_140--Hb_004282_030 Hb_076583_010 Hb_076583_010 Hb_000004_140--Hb_076583_010 Hb_128173_010 Hb_128173_010 Hb_000004_140--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_000004_140--Hb_007761_010 Hb_001206_070--Hb_022593_060 Hb_001206_070--Hb_010024_010 Hb_001206_070--Hb_000116_080 Hb_001206_070--Hb_001241_060 Hb_022593_060--Hb_010024_010 Hb_022593_060--Hb_001241_060 Hb_022593_060--Hb_000116_080 Hb_004429_040 Hb_004429_040 Hb_022593_060--Hb_004429_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0794977 0.0336074 0 0.0414656 0.0373237 1.2635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis