Hb_000962_030

Information

Type -
Description -
Location Contig962: 83595-88582
Sequence    

Annotation

kegg
ID pop:POPTR_0016s04430g
description POPTRDRAFT_667366; hypothetical protein
nr
ID XP_012087779.1
description PREDICTED: metal tolerance protein C2 [Jatropha curcas]
swissprot
ID Q6ICY4
description Metal tolerance protein C2 OS=Arabidopsis thaliana GN=MTPC2 PE=2 SV=1
trembl
ID A0A067JKX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25547 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein c2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63749: 83587-88363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000962_030 0.0 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
2 Hb_002110_080 0.0660760863 - - FH interacting protein 1 [Theobroma cacao]
3 Hb_001114_110 0.0701907266 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
4 Hb_001481_060 0.0705994549 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
5 Hb_007248_030 0.0710433298 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
6 Hb_004705_170 0.0724706562 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
7 Hb_001405_210 0.0738091562 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
8 Hb_004990_010 0.0742513732 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
9 Hb_017387_010 0.077374872 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
10 Hb_002989_020 0.0795850757 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
11 Hb_001434_080 0.0799645237 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
12 Hb_000089_180 0.0810386833 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
13 Hb_004037_020 0.0823395035 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
14 Hb_000345_160 0.082366337 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
15 Hb_007062_030 0.0824429127 - - hypothetical protein VITISV_039033 [Vitis vinifera]
16 Hb_004102_170 0.0825953616 - - PREDICTED: lys-63-specific deubiquitinase BRCC36-like [Jatropha curcas]
17 Hb_163175_010 0.0838791242 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
18 Hb_002492_010 0.0856794264 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
19 Hb_000331_090 0.0858091755 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
20 Hb_000981_030 0.0858213622 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]

Gene co-expression network

sample Hb_000962_030 Hb_000962_030 Hb_002110_080 Hb_002110_080 Hb_000962_030--Hb_002110_080 Hb_001114_110 Hb_001114_110 Hb_000962_030--Hb_001114_110 Hb_001481_060 Hb_001481_060 Hb_000962_030--Hb_001481_060 Hb_007248_030 Hb_007248_030 Hb_000962_030--Hb_007248_030 Hb_004705_170 Hb_004705_170 Hb_000962_030--Hb_004705_170 Hb_001405_210 Hb_001405_210 Hb_000962_030--Hb_001405_210 Hb_000029_060 Hb_000029_060 Hb_002110_080--Hb_000029_060 Hb_002110_080--Hb_001481_060 Hb_002492_010 Hb_002492_010 Hb_002110_080--Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_002110_080--Hb_001716_020 Hb_000087_060 Hb_000087_060 Hb_002110_080--Hb_000087_060 Hb_015026_130 Hb_015026_130 Hb_001114_110--Hb_015026_130 Hb_021165_010 Hb_021165_010 Hb_001114_110--Hb_021165_010 Hb_031527_030 Hb_031527_030 Hb_001114_110--Hb_031527_030 Hb_016172_030 Hb_016172_030 Hb_001114_110--Hb_016172_030 Hb_001434_080 Hb_001434_080 Hb_001114_110--Hb_001434_080 Hb_001481_060--Hb_001716_020 Hb_001481_060--Hb_007248_030 Hb_001481_060--Hb_002492_010 Hb_000345_160 Hb_000345_160 Hb_001481_060--Hb_000345_160 Hb_033312_040 Hb_033312_040 Hb_001481_060--Hb_033312_040 Hb_004037_020 Hb_004037_020 Hb_001481_060--Hb_004037_020 Hb_004586_060 Hb_004586_060 Hb_007248_030--Hb_004586_060 Hb_007248_030--Hb_001405_210 Hb_000702_090 Hb_000702_090 Hb_007248_030--Hb_000702_090 Hb_002014_010 Hb_002014_010 Hb_007248_030--Hb_002014_010 Hb_001856_180 Hb_001856_180 Hb_007248_030--Hb_001856_180 Hb_000215_300 Hb_000215_300 Hb_004705_170--Hb_000215_300 Hb_007472_070 Hb_007472_070 Hb_004705_170--Hb_007472_070 Hb_004705_170--Hb_000345_160 Hb_004705_170--Hb_004037_020 Hb_000778_010 Hb_000778_010 Hb_004705_170--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_004705_170--Hb_163175_010 Hb_000046_570 Hb_000046_570 Hb_001405_210--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_001405_210--Hb_007062_040 Hb_001405_210--Hb_001856_180 Hb_086063_020 Hb_086063_020 Hb_001405_210--Hb_086063_020 Hb_001405_210--Hb_004586_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28857 6.70918 5.93623 8.97488 3.74912 6.70315
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11423 5.61776 3.78563 6.89821 4.70049

CAGE analysis