Hb_000963_030

Information

Type -
Description -
Location Contig963: 37561-41463
Sequence    

Annotation

kegg
ID rcu:RCOM_0154130
description hypothetical protein
nr
ID XP_012064824.1
description PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SWB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0154130 PE=4 SV=1
Gene Ontology
ID GO:0009507
description PREDICTED: uncharacterized protein LOC105628095

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63821: 37680-37904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_030 0.0 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
2 Hb_011689_050 0.0816526416 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
3 Hb_007943_140 0.0889872302 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
4 Hb_000172_420 0.094138095 - - 60S ribosomal protein L30, putative [Ricinus communis]
5 Hb_002248_100 0.097941995 - - hypothetical protein VITISV_027197 [Vitis vinifera]
6 Hb_026398_010 0.0995419503 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
7 Hb_000805_130 0.1000711546 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001045_080 0.1035872878 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
9 Hb_002835_320 0.1036909432 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_007575_070 0.1057501491 - - Histone H3.2 [Glycine soja]
11 Hb_000853_240 0.1070438105 - - -
12 Hb_000696_220 0.107706672 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
13 Hb_001123_120 0.1084626472 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
14 Hb_017862_010 0.1096997034 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
15 Hb_000161_050 0.11065915 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000144_110 0.110870545 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
17 Hb_001269_270 0.1122792341 - - 60S ribosomal protein L27B [Hevea brasiliensis]
18 Hb_000085_330 0.1125278699 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
19 Hb_000617_090 0.1132407282 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
20 Hb_008948_050 0.113851692 - - hypothetical protein JCGZ_13339 [Jatropha curcas]

Gene co-expression network

sample Hb_000963_030 Hb_000963_030 Hb_011689_050 Hb_011689_050 Hb_000963_030--Hb_011689_050 Hb_007943_140 Hb_007943_140 Hb_000963_030--Hb_007943_140 Hb_000172_420 Hb_000172_420 Hb_000963_030--Hb_000172_420 Hb_002248_100 Hb_002248_100 Hb_000963_030--Hb_002248_100 Hb_026398_010 Hb_026398_010 Hb_000963_030--Hb_026398_010 Hb_000805_130 Hb_000805_130 Hb_000963_030--Hb_000805_130 Hb_004958_050 Hb_004958_050 Hb_011689_050--Hb_004958_050 Hb_001616_020 Hb_001616_020 Hb_011689_050--Hb_001616_020 Hb_001123_120 Hb_001123_120 Hb_011689_050--Hb_001123_120 Hb_000161_050 Hb_000161_050 Hb_011689_050--Hb_000161_050 Hb_000144_110 Hb_000144_110 Hb_011689_050--Hb_000144_110 Hb_007943_140--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_007943_140--Hb_001017_070 Hb_007943_140--Hb_000172_420 Hb_097007_010 Hb_097007_010 Hb_007943_140--Hb_097007_010 Hb_007943_140--Hb_026398_010 Hb_000172_420--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_000172_420--Hb_000635_080 Hb_000270_720 Hb_000270_720 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050 Hb_002248_100--Hb_000635_080 Hb_002248_100--Hb_006588_080 Hb_010827_020 Hb_010827_020 Hb_002248_100--Hb_010827_020 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_026398_010--Hb_172221_010 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_000329_020 Hb_000329_020 Hb_026398_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_026398_010--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_026398_010--Hb_002588_010 Hb_007575_070 Hb_007575_070 Hb_000805_130--Hb_007575_070 Hb_001634_040 Hb_001634_040 Hb_000805_130--Hb_001634_040 Hb_000805_130--Hb_000172_420 Hb_000805_130--Hb_000062_390 Hb_000805_130--Hb_008948_050 Hb_076626_010 Hb_076626_010 Hb_000805_130--Hb_076626_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8227 3.03421 4.41203 6.77554 7.206 9.55477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7435 63.056 17.2816 9.93577 2.08431

CAGE analysis