Hb_000963_140

Information

Type -
Description -
Location Contig963: 98572-99702
Sequence    

Annotation

kegg
ID rcu:RCOM_0154720
description ubiquitin-protein ligase, putative
nr
ID XP_002530291.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9FKJ0
description F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana GN=At5g60570 PE=2 SV=1
trembl
ID B9SWC2
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0154720 PE=4 SV=1
Gene Ontology
ID GO:0005634
description f-box kelch-repeat protein at5g60570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63829: 98246-100537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_140 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000099_130 0.1162241824 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
3 Hb_000141_030 0.1163197814 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
4 Hb_001159_080 0.1217173068 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
5 Hb_000836_130 0.1261721289 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
6 Hb_001135_210 0.1308467511 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
7 Hb_003581_260 0.1429469189 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
8 Hb_000784_030 0.1454174898 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
9 Hb_010931_050 0.1456871118 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
10 Hb_001096_110 0.1463757683 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
11 Hb_002078_480 0.1466428111 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
12 Hb_001232_140 0.1523705582 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
13 Hb_001357_010 0.152573527 - - -
14 Hb_000069_660 0.1542346743 - - PREDICTED: mitochondrial carrier protein MTM1 isoform X1 [Jatropha curcas]
15 Hb_011360_080 0.1542927161 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
16 Hb_029510_040 0.1562714014 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
17 Hb_000368_060 0.1565158841 - - thioredoxin H-type 6 [Hevea brasiliensis]
18 Hb_001053_150 0.1566870685 - - -
19 Hb_002182_030 0.1579186723 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
20 Hb_000562_040 0.1579295581 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000963_140 Hb_000963_140 Hb_000099_130 Hb_000099_130 Hb_000963_140--Hb_000099_130 Hb_000141_030 Hb_000141_030 Hb_000963_140--Hb_000141_030 Hb_001159_080 Hb_001159_080 Hb_000963_140--Hb_001159_080 Hb_000836_130 Hb_000836_130 Hb_000963_140--Hb_000836_130 Hb_001135_210 Hb_001135_210 Hb_000963_140--Hb_001135_210 Hb_003581_260 Hb_003581_260 Hb_000963_140--Hb_003581_260 Hb_000099_130--Hb_001135_210 Hb_000141_020 Hb_000141_020 Hb_000099_130--Hb_000141_020 Hb_001232_140 Hb_001232_140 Hb_000099_130--Hb_001232_140 Hb_000099_130--Hb_001159_080 Hb_000424_210 Hb_000424_210 Hb_000099_130--Hb_000424_210 Hb_162275_030 Hb_162275_030 Hb_000099_130--Hb_162275_030 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_011360_080 Hb_011360_080 Hb_000141_030--Hb_011360_080 Hb_004429_070 Hb_004429_070 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000368_060 Hb_000368_060 Hb_000141_030--Hb_000368_060 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_001159_080--Hb_003581_260 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_001159_080--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_001159_080--Hb_000125_030 Hb_000784_030 Hb_000784_030 Hb_000836_130--Hb_000784_030 Hb_000084_320 Hb_000084_320 Hb_000836_130--Hb_000084_320 Hb_000836_130--Hb_001135_210 Hb_001357_120 Hb_001357_120 Hb_000836_130--Hb_001357_120 Hb_003581_220 Hb_003581_220 Hb_000836_130--Hb_003581_220 Hb_000836_130--Hb_000099_130 Hb_001135_210--Hb_001232_140 Hb_002182_030 Hb_002182_030 Hb_001135_210--Hb_002182_030 Hb_001135_210--Hb_000784_030 Hb_001157_010 Hb_001157_010 Hb_001135_210--Hb_001157_010 Hb_006472_050 Hb_006472_050 Hb_001135_210--Hb_006472_050 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_003581_260--Hb_002182_030 Hb_003581_260--Hb_001135_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.884 12.8178 5.43646 34.5423 13.002 17.5012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.8929 107.23 208.634 24.4228 36.3997

CAGE analysis