Hb_000963_180

Information

Type -
Description -
Location Contig963: 136904-144394
Sequence    

Annotation

kegg
ID rcu:RCOM_0155030
description calcium/calmodulin-dependent protein kinase kinase, putative (EC:2.7.11.17)
nr
ID XP_002530292.1
description calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
swissprot
ID Q5HZ38
description Serine/threonine-protein kinase GRIK2 OS=Arabidopsis thaliana GN=GRIK2 PE=1 SV=1
trembl
ID B9SWC3
description Calcium/calmodulin-dependent protein kinase kinase, putative OS=Ricinus communis GN=RCOM_0155030 PE=4 SV=1
Gene Ontology
ID GO:0004683
description serine threonine-protein kinase grik1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63830: 136880-144378 , PASA_asmbl_63831: 136883-144378 , PASA_asmbl_63832: 141707-142085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_180 0.0 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
2 Hb_000023_340 0.0593611524 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
3 Hb_029866_070 0.0667344768 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
4 Hb_000046_110 0.0788647429 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
5 Hb_001461_010 0.0805810948 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
6 Hb_001829_060 0.0865242621 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
7 Hb_029866_040 0.0866457695 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
8 Hb_000975_300 0.0867776737 - - Rab2 [Hevea brasiliensis]
9 Hb_007100_030 0.0870336598 - - 40S ribosomal protein S17B [Hevea brasiliensis]
10 Hb_009666_040 0.0875516815 - - glutathione transferase, putative [Ricinus communis]
11 Hb_008544_010 0.0892702182 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
12 Hb_004374_140 0.0907899846 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
13 Hb_000377_060 0.0914355854 - - ARF GTPase activator, putative [Ricinus communis]
14 Hb_003632_010 0.0927073909 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000979_230 0.0933230096 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
16 Hb_001109_020 0.0963264127 - - conserved hypothetical protein [Ricinus communis]
17 Hb_032803_010 0.0965722493 - - PREDICTED: glycosyltransferase-like At2g41451 [Jatropha curcas]
18 Hb_000224_120 0.0968266297 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
19 Hb_001842_040 0.0973662117 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
20 Hb_000302_220 0.0976313508 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000963_180 Hb_000963_180 Hb_000023_340 Hb_000023_340 Hb_000963_180--Hb_000023_340 Hb_029866_070 Hb_029866_070 Hb_000963_180--Hb_029866_070 Hb_000046_110 Hb_000046_110 Hb_000963_180--Hb_000046_110 Hb_001461_010 Hb_001461_010 Hb_000963_180--Hb_001461_010 Hb_001829_060 Hb_001829_060 Hb_000963_180--Hb_001829_060 Hb_029866_040 Hb_029866_040 Hb_000963_180--Hb_029866_040 Hb_006573_220 Hb_006573_220 Hb_000023_340--Hb_006573_220 Hb_000441_190 Hb_000441_190 Hb_000023_340--Hb_000441_190 Hb_001141_030 Hb_001141_030 Hb_000023_340--Hb_001141_030 Hb_003632_010 Hb_003632_010 Hb_000023_340--Hb_003632_010 Hb_001842_040 Hb_001842_040 Hb_000023_340--Hb_001842_040 Hb_003964_100 Hb_003964_100 Hb_029866_070--Hb_003964_100 Hb_008300_010 Hb_008300_010 Hb_029866_070--Hb_008300_010 Hb_029866_070--Hb_001461_010 Hb_010174_020 Hb_010174_020 Hb_029866_070--Hb_010174_020 Hb_000152_550 Hb_000152_550 Hb_029866_070--Hb_000152_550 Hb_001109_020 Hb_001109_020 Hb_000046_110--Hb_001109_020 Hb_000046_110--Hb_001829_060 Hb_000751_130 Hb_000751_130 Hb_000046_110--Hb_000751_130 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_000046_110--Hb_003632_010 Hb_003927_130 Hb_003927_130 Hb_000046_110--Hb_003927_130 Hb_004374_140 Hb_004374_140 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_001829_060--Hb_001109_020 Hb_000329_310 Hb_000329_310 Hb_001829_060--Hb_000329_310 Hb_001829_060--Hb_003927_130 Hb_009666_040 Hb_009666_040 Hb_001829_060--Hb_009666_040 Hb_001829_060--Hb_000751_130 Hb_000377_060 Hb_000377_060 Hb_029866_040--Hb_000377_060 Hb_005431_010 Hb_005431_010 Hb_029866_040--Hb_005431_010 Hb_000001_050 Hb_000001_050 Hb_029866_040--Hb_000001_050 Hb_011381_100 Hb_011381_100 Hb_029866_040--Hb_011381_100 Hb_029866_040--Hb_001109_020 Hb_000009_160 Hb_000009_160 Hb_029866_040--Hb_000009_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8271 3.14686 8.23026 18.5186 13.2802 24.6788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.9738 42.4235 45.2161 10.3427 6.35622

CAGE analysis