Hb_000963_200

Information

Type -
Description -
Location Contig963: 168793-193946
Sequence    

Annotation

kegg
ID rcu:RCOM_0155170
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_002530296.1
description beta-galactosidase, putative [Ricinus communis]
swissprot
ID Q9SCV4
description Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2
trembl
ID B9SWC7
description Beta-galactosidase OS=Ricinus communis GN=RCOM_0155170 PE=3 SV=1
Gene Ontology
ID GO:0005618
description beta-galactosidase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63837: 175098-176157 , PASA_asmbl_63839: 178746-179653 , PASA_asmbl_63841: 186105-188309 , PASA_asmbl_63842: 188468-188623
cDNA
(Sanger)
(ID:Location)		 032_D08.ab1: 168981-169715

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000963_200 0.0 - - beta-galactosidase, putative [Ricinus communis]
2 Hb_000034_030 0.1137676085 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_029584_090 0.1191382423 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
4 Hb_006594_060 0.1330272082 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
5 Hb_032631_050 0.1382211559 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
6 Hb_003453_030 0.1464728224 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
7 Hb_011200_020 0.1478760967 - - aldo-keto reductase, putative [Ricinus communis]
8 Hb_000236_050 0.1565998292 - - phosphate transporter [Manihot esculenta]
9 Hb_001408_050 0.1566986403 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000527_140 0.1573617785 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
11 Hb_005237_040 0.1582391031 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
12 Hb_002750_010 0.159304981 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
13 Hb_001006_280 0.1593789626 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
14 Hb_000421_270 0.1600370112 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
15 Hb_002025_350 0.1606187449 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
16 Hb_000029_370 0.1641780379 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_004657_040 0.1652027122 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
18 Hb_000227_370 0.1656385077 - - sugar transporter, putative [Ricinus communis]
19 Hb_014037_010 0.1657794508 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
20 Hb_009785_010 0.1696596023 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]

Gene co-expression network

sample Hb_000963_200 Hb_000963_200 Hb_000034_030 Hb_000034_030 Hb_000963_200--Hb_000034_030 Hb_029584_090 Hb_029584_090 Hb_000963_200--Hb_029584_090 Hb_006594_060 Hb_006594_060 Hb_000963_200--Hb_006594_060 Hb_032631_050 Hb_032631_050 Hb_000963_200--Hb_032631_050 Hb_003453_030 Hb_003453_030 Hb_000963_200--Hb_003453_030 Hb_011200_020 Hb_011200_020 Hb_000963_200--Hb_011200_020 Hb_001006_280 Hb_001006_280 Hb_000034_030--Hb_001006_280 Hb_000236_050 Hb_000236_050 Hb_000034_030--Hb_000236_050 Hb_038670_010 Hb_038670_010 Hb_000034_030--Hb_038670_010 Hb_005237_040 Hb_005237_040 Hb_000034_030--Hb_005237_040 Hb_001405_150 Hb_001405_150 Hb_000034_030--Hb_001405_150 Hb_004495_020 Hb_004495_020 Hb_029584_090--Hb_004495_020 Hb_001341_200 Hb_001341_200 Hb_029584_090--Hb_001341_200 Hb_029584_090--Hb_032631_050 Hb_000421_270 Hb_000421_270 Hb_029584_090--Hb_000421_270 Hb_002025_350 Hb_002025_350 Hb_029584_090--Hb_002025_350 Hb_000811_010 Hb_000811_010 Hb_006594_060--Hb_000811_010 Hb_022501_020 Hb_022501_020 Hb_006594_060--Hb_022501_020 Hb_000527_140 Hb_000527_140 Hb_006594_060--Hb_000527_140 Hb_082683_010 Hb_082683_010 Hb_006594_060--Hb_082683_010 Hb_006316_030 Hb_006316_030 Hb_006594_060--Hb_006316_030 Hb_032631_050--Hb_000421_270 Hb_001348_210 Hb_001348_210 Hb_032631_050--Hb_001348_210 Hb_032631_050--Hb_011200_020 Hb_032631_050--Hb_002025_350 Hb_004195_170 Hb_004195_170 Hb_003453_030--Hb_004195_170 Hb_001408_050 Hb_001408_050 Hb_003453_030--Hb_001408_050 Hb_012807_060 Hb_012807_060 Hb_003453_030--Hb_012807_060 Hb_003453_030--Hb_022501_020 Hb_001454_410 Hb_001454_410 Hb_003453_030--Hb_001454_410 Hb_009581_050 Hb_009581_050 Hb_003453_030--Hb_009581_050 Hb_000098_310 Hb_000098_310 Hb_011200_020--Hb_000098_310 Hb_001504_220 Hb_001504_220 Hb_011200_020--Hb_001504_220 Hb_032225_040 Hb_032225_040 Hb_011200_020--Hb_032225_040 Hb_031042_030 Hb_031042_030 Hb_011200_020--Hb_031042_030 Hb_011200_020--Hb_000421_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0325555 8.47962 2.99874 5.16545 0.0274306 0.0536293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40525 0.943906 0.555821 14.308 2.46604

CAGE analysis