Hb_000964_040

Information

Type -
Description -
Location Contig964: 34020-38498
Sequence    

Annotation

kegg
ID rcu:RCOM_0403800
description protein binding protein, putative
nr
ID XP_012065554.1
description PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
swissprot
ID Q8L649
description E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1
trembl
ID A0A067L4R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16753 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin ligase big brother

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_040 0.0 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
2 Hb_150299_010 0.0729379299 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
3 Hb_007122_020 0.0732844787 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
4 Hb_009783_010 0.080116879 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
5 Hb_001789_230 0.0822298529 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012132_050 0.0851862239 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
7 Hb_004607_060 0.0883682141 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2 [Jatropha curcas]
8 Hb_007904_280 0.0943132156 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
9 Hb_000827_020 0.0948623587 - - unnamed protein product [Coffea canephora]
10 Hb_001136_160 0.0953742334 - - catalytic, putative [Ricinus communis]
11 Hb_001136_040 0.0974529034 - - amino acid transporter, putative [Ricinus communis]
12 Hb_001898_040 0.1047878918 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_005127_050 0.1061370122 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
14 Hb_053264_010 0.1070053383 - - beta glucosidase [Hevea brasiliensis]
15 Hb_000866_130 0.1097365989 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
16 Hb_000261_070 0.110631216 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
17 Hb_000230_410 0.1111842482 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
18 Hb_000012_350 0.1120543869 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
19 Hb_132381_010 0.1123254038 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
20 Hb_003466_010 0.1140585919 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]

Gene co-expression network

sample Hb_000964_040 Hb_000964_040 Hb_150299_010 Hb_150299_010 Hb_000964_040--Hb_150299_010 Hb_007122_020 Hb_007122_020 Hb_000964_040--Hb_007122_020 Hb_009783_010 Hb_009783_010 Hb_000964_040--Hb_009783_010 Hb_001789_230 Hb_001789_230 Hb_000964_040--Hb_001789_230 Hb_012132_050 Hb_012132_050 Hb_000964_040--Hb_012132_050 Hb_004607_060 Hb_004607_060 Hb_000964_040--Hb_004607_060 Hb_005127_050 Hb_005127_050 Hb_150299_010--Hb_005127_050 Hb_150299_010--Hb_007122_020 Hb_000261_070 Hb_000261_070 Hb_150299_010--Hb_000261_070 Hb_150299_010--Hb_004607_060 Hb_150299_010--Hb_001789_230 Hb_001975_110 Hb_001975_110 Hb_007122_020--Hb_001975_110 Hb_001136_160 Hb_001136_160 Hb_007122_020--Hb_001136_160 Hb_002902_060 Hb_002902_060 Hb_007122_020--Hb_002902_060 Hb_001136_040 Hb_001136_040 Hb_007122_020--Hb_001136_040 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_001898_040 Hb_001898_040 Hb_009783_010--Hb_001898_040 Hb_009783_010--Hb_012132_050 Hb_009783_010--Hb_001136_040 Hb_009783_010--Hb_001136_160 Hb_007185_050 Hb_007185_050 Hb_009783_010--Hb_007185_050 Hb_003090_220 Hb_003090_220 Hb_001789_230--Hb_003090_220 Hb_002918_270 Hb_002918_270 Hb_001789_230--Hb_002918_270 Hb_002260_140 Hb_002260_140 Hb_001789_230--Hb_002260_140 Hb_001818_010 Hb_001818_010 Hb_001789_230--Hb_001818_010 Hb_003466_010 Hb_003466_010 Hb_001789_230--Hb_003466_010 Hb_012132_050--Hb_007904_280 Hb_012132_050--Hb_001898_040 Hb_012132_050--Hb_001136_160 Hb_001408_080 Hb_001408_080 Hb_012132_050--Hb_001408_080 Hb_012132_050--Hb_003466_010 Hb_000724_060 Hb_000724_060 Hb_004607_060--Hb_000724_060 Hb_004607_060--Hb_001408_080 Hb_004607_060--Hb_012132_050 Hb_004607_060--Hb_005127_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.10169 0.380947 1.0442 0.0270699 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0211193 0.314738

CAGE analysis