Hb_000964_060

Information

Type -
Description -
Location Contig964: 43635-43841
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06660g
description POPTRDRAFT_557769; hypothetical protein
nr
ID XP_002314033.2
description hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PBX3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06660g PE=2 SV=1
Gene Ontology
ID GO:0004527
description f-box wd repeat-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63849: 43417-43919
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_060 0.0 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
2 Hb_023732_040 0.2405168785 - - cytochrome P450, putative [Ricinus communis]
3 Hb_002073_120 0.2454819469 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
4 Hb_074238_010 0.2534379681 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
5 Hb_003333_050 0.2578010656 - - hypothetical protein JCGZ_20906 [Jatropha curcas]
6 Hb_006280_010 0.2661614067 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
7 Hb_029866_030 0.2686930158 - - hypothetical protein CICLE_v10006898mg [Citrus clementina]
8 Hb_010417_010 0.2794530805 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_002513_030 0.2829585975 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
10 Hb_000172_570 0.2866698889 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
11 Hb_002046_070 0.2873583481 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like isoform X1 [Populus euphratica]
12 Hb_002522_020 0.2881718239 - - hypothetical protein B456_011G148700, partial [Gossypium raimondii]
13 Hb_008760_010 0.2887970959 - - berberine bridge enzyme [Hevea brasiliensis]
14 Hb_004208_100 0.291441255 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
15 Hb_005060_020 0.29365345 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
16 Hb_000226_100 0.2941664317 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
17 Hb_007975_040 0.2953681547 - - PREDICTED: uncharacterized protein LOC104610918 [Nelumbo nucifera]
18 Hb_000009_070 0.2983305562 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
19 Hb_012053_060 0.2991508438 - - PREDICTED: BTB/POZ domain-containing protein At3g44820 isoform X2 [Jatropha curcas]
20 Hb_000538_180 0.3004253912 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000964_060 Hb_000964_060 Hb_023732_040 Hb_023732_040 Hb_000964_060--Hb_023732_040 Hb_002073_120 Hb_002073_120 Hb_000964_060--Hb_002073_120 Hb_074238_010 Hb_074238_010 Hb_000964_060--Hb_074238_010 Hb_003333_050 Hb_003333_050 Hb_000964_060--Hb_003333_050 Hb_006280_010 Hb_006280_010 Hb_000964_060--Hb_006280_010 Hb_029866_030 Hb_029866_030 Hb_000964_060--Hb_029866_030 Hb_000477_080 Hb_000477_080 Hb_023732_040--Hb_000477_080 Hb_000172_570 Hb_000172_570 Hb_023732_040--Hb_000172_570 Hb_001277_090 Hb_001277_090 Hb_023732_040--Hb_001277_090 Hb_004460_010 Hb_004460_010 Hb_023732_040--Hb_004460_010 Hb_009314_010 Hb_009314_010 Hb_023732_040--Hb_009314_010 Hb_000094_130 Hb_000094_130 Hb_023732_040--Hb_000094_130 Hb_002073_120--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_002073_120--Hb_010417_010 Hb_000995_070 Hb_000995_070 Hb_002073_120--Hb_000995_070 Hb_004208_100 Hb_004208_100 Hb_002073_120--Hb_004208_100 Hb_000009_070 Hb_000009_070 Hb_002073_120--Hb_000009_070 Hb_000141_240 Hb_000141_240 Hb_002073_120--Hb_000141_240 Hb_000083_040 Hb_000083_040 Hb_074238_010--Hb_000083_040 Hb_006355_050 Hb_006355_050 Hb_074238_010--Hb_006355_050 Hb_154340_010 Hb_154340_010 Hb_074238_010--Hb_154340_010 Hb_000638_040 Hb_000638_040 Hb_074238_010--Hb_000638_040 Hb_000705_280 Hb_000705_280 Hb_074238_010--Hb_000705_280 Hb_000440_030 Hb_000440_030 Hb_074238_010--Hb_000440_030 Hb_001222_050 Hb_001222_050 Hb_003333_050--Hb_001222_050 Hb_000010_410 Hb_000010_410 Hb_003333_050--Hb_000010_410 Hb_003333_050--Hb_001277_090 Hb_000130_110 Hb_000130_110 Hb_003333_050--Hb_000130_110 Hb_005224_010 Hb_005224_010 Hb_003333_050--Hb_005224_010 Hb_011316_020 Hb_011316_020 Hb_003333_050--Hb_011316_020 Hb_006280_010--Hb_004460_010 Hb_001035_070 Hb_001035_070 Hb_006280_010--Hb_001035_070 Hb_002513_030 Hb_002513_030 Hb_006280_010--Hb_002513_030 Hb_000213_080 Hb_000213_080 Hb_006280_010--Hb_000213_080 Hb_177179_010 Hb_177179_010 Hb_006280_010--Hb_177179_010 Hb_006280_010--Hb_001277_090 Hb_029866_030--Hb_002073_120 Hb_029866_030--Hb_003333_050 Hb_000077_060 Hb_000077_060 Hb_029866_030--Hb_000077_060 Hb_012053_060 Hb_012053_060 Hb_029866_030--Hb_012053_060 Hb_029866_030--Hb_006280_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.95871 12.6004 11.9832 19.9906 15.3468 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.02418 28.3649 321.953 64.6798 6.98086

CAGE analysis