Hb_000964_070

Information

Type -
Description -
Location Contig964: 52542-57618
Sequence    

Annotation

kegg
ID tcc:TCM_005886
description ATP synthase subunit O, mitochondrial
nr
ID XP_012065559.1
description PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
swissprot
ID P22778
description ATP synthase subunit O, mitochondrial OS=Ipomoea batatas PE=1 SV=1
trembl
ID A0A067LH00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16756 PE=3 SV=1
Gene Ontology
ID GO:0005753
description atp synthase subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_070 0.0 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
2 Hb_004984_080 0.184837239 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
3 Hb_085083_020 0.2057804278 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
4 Hb_000941_150 0.2194740518 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
5 Hb_003211_030 0.2200550314 - - -
6 Hb_000676_200 0.2215109532 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
7 Hb_066487_010 0.223473034 - - conserved hypothetical protein [Ricinus communis]
8 Hb_165928_040 0.2283596863 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
9 Hb_000111_110 0.2319945747 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_010175_030 0.2329270262 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
11 Hb_010998_020 0.235475713 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
12 Hb_003175_110 0.2366054253 - - -
13 Hb_006816_470 0.2410075701 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
14 Hb_012098_070 0.2413226718 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
15 Hb_000392_160 0.2413826538 - - PREDICTED: probable methyltransferase PMT2 isoform X1 [Jatropha curcas]
16 Hb_000404_040 0.2431869205 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000183_030 0.2439104997 - - PREDICTED: probable zinc transporter protein DDB_G0291141 [Populus euphratica]
18 Hb_004586_160 0.2451589296 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
19 Hb_009455_020 0.2460037393 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
20 Hb_155832_010 0.2470580606 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_000964_070 Hb_000964_070 Hb_004984_080 Hb_004984_080 Hb_000964_070--Hb_004984_080 Hb_085083_020 Hb_085083_020 Hb_000964_070--Hb_085083_020 Hb_000941_150 Hb_000941_150 Hb_000964_070--Hb_000941_150 Hb_003211_030 Hb_003211_030 Hb_000964_070--Hb_003211_030 Hb_000676_200 Hb_000676_200 Hb_000964_070--Hb_000676_200 Hb_066487_010 Hb_066487_010 Hb_000964_070--Hb_066487_010 Hb_085187_010 Hb_085187_010 Hb_004984_080--Hb_085187_010 Hb_006816_230 Hb_006816_230 Hb_004984_080--Hb_006816_230 Hb_007933_040 Hb_007933_040 Hb_004984_080--Hb_007933_040 Hb_001210_040 Hb_001210_040 Hb_004984_080--Hb_001210_040 Hb_000649_060 Hb_000649_060 Hb_004984_080--Hb_000649_060 Hb_002639_040 Hb_002639_040 Hb_004984_080--Hb_002639_040 Hb_003175_110 Hb_003175_110 Hb_085083_020--Hb_003175_110 Hb_085083_020--Hb_066487_010 Hb_063943_010 Hb_063943_010 Hb_085083_020--Hb_063943_010 Hb_005523_010 Hb_005523_010 Hb_085083_020--Hb_005523_010 Hb_090530_010 Hb_090530_010 Hb_085083_020--Hb_090530_010 Hb_000409_030 Hb_000409_030 Hb_000941_150--Hb_000409_030 Hb_000976_100 Hb_000976_100 Hb_000941_150--Hb_000976_100 Hb_002099_080 Hb_002099_080 Hb_000941_150--Hb_002099_080 Hb_000183_030 Hb_000183_030 Hb_000941_150--Hb_000183_030 Hb_000922_030 Hb_000922_030 Hb_000941_150--Hb_000922_030 Hb_007820_010 Hb_007820_010 Hb_000941_150--Hb_007820_010 Hb_000392_160 Hb_000392_160 Hb_003211_030--Hb_000392_160 Hb_000309_050 Hb_000309_050 Hb_003211_030--Hb_000309_050 Hb_003211_030--Hb_000183_030 Hb_002611_010 Hb_002611_010 Hb_003211_030--Hb_002611_010 Hb_001138_060 Hb_001138_060 Hb_003211_030--Hb_001138_060 Hb_000656_310 Hb_000656_310 Hb_003211_030--Hb_000656_310 Hb_003475_020 Hb_003475_020 Hb_000676_200--Hb_003475_020 Hb_002374_250 Hb_002374_250 Hb_000676_200--Hb_002374_250 Hb_002631_250 Hb_002631_250 Hb_000676_200--Hb_002631_250 Hb_030131_030 Hb_030131_030 Hb_000676_200--Hb_030131_030 Hb_005282_020 Hb_005282_020 Hb_000676_200--Hb_005282_020 Hb_003878_080 Hb_003878_080 Hb_000676_200--Hb_003878_080 Hb_012098_070 Hb_012098_070 Hb_066487_010--Hb_012098_070 Hb_020665_010 Hb_020665_010 Hb_066487_010--Hb_020665_010 Hb_001005_050 Hb_001005_050 Hb_066487_010--Hb_001005_050 Hb_066487_010--Hb_007820_010 Hb_003467_030 Hb_003467_030 Hb_066487_010--Hb_003467_030 Hb_006274_050 Hb_006274_050 Hb_066487_010--Hb_006274_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.538445 0.350536 0.244089 0.682354 0.795711 0.0464569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.103982 0.272671 1.22502 1.02443 2.10224

CAGE analysis