Hb_000964_100

Information

Type -
Description -
Location Contig964: 88635-90461
Sequence    

Annotation

kegg
ID tcc:TCM_005884
description Group 2, putative
nr
ID XP_012065561.1
description PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4S2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16758 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63853: 88379-88516 , PASA_asmbl_63854: 89898-90316
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_100 0.0 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
2 Hb_004449_230 0.2556010428 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_001001_050 0.2803141316 - - CXE protein [Hevea brasiliensis]
4 Hb_000155_060 0.302294989 - - ATP binding protein, putative [Ricinus communis]
5 Hb_011903_010 0.3080693808 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_113084_010 0.3092333569 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_000016_050 0.3094234652 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
8 Hb_000347_090 0.313279314 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
9 Hb_001007_080 0.3173221826 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
10 Hb_004064_030 0.3186831528 - - aldose-1-epimerase, putative [Ricinus communis]
11 Hb_006502_100 0.3378543651 - - hypothetical protein POPTR_0003s01580g [Populus trichocarpa]
12 Hb_000424_080 0.3401219845 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
13 Hb_010174_050 0.3434798935 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
14 Hb_019592_010 0.3470546142 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
15 Hb_000472_010 0.3482886233 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_002843_090 0.3484744267 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
17 Hb_123560_030 0.3491253118 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_119960_010 0.3495295702 - - PREDICTED: pectinesterase-like [Populus euphratica]
19 Hb_019333_010 0.3501631624 - - PREDICTED: uncharacterized protein LOC105633210 [Jatropha curcas]
20 Hb_006620_080 0.3513889403 - - hypothetical protein JCGZ_12043 [Jatropha curcas]

Gene co-expression network

sample Hb_000964_100 Hb_000964_100 Hb_004449_230 Hb_004449_230 Hb_000964_100--Hb_004449_230 Hb_001001_050 Hb_001001_050 Hb_000964_100--Hb_001001_050 Hb_000155_060 Hb_000155_060 Hb_000964_100--Hb_000155_060 Hb_011903_010 Hb_011903_010 Hb_000964_100--Hb_011903_010 Hb_113084_010 Hb_113084_010 Hb_000964_100--Hb_113084_010 Hb_000016_050 Hb_000016_050 Hb_000964_100--Hb_000016_050 Hb_004449_230--Hb_001001_050 Hb_004449_230--Hb_000155_060 Hb_000472_010 Hb_000472_010 Hb_004449_230--Hb_000472_010 Hb_000424_080 Hb_000424_080 Hb_004449_230--Hb_000424_080 Hb_013877_020 Hb_013877_020 Hb_004449_230--Hb_013877_020 Hb_001001_050--Hb_000424_080 Hb_002235_270 Hb_002235_270 Hb_001001_050--Hb_002235_270 Hb_004064_030 Hb_004064_030 Hb_001001_050--Hb_004064_030 Hb_000668_090 Hb_000668_090 Hb_001001_050--Hb_000668_090 Hb_000258_150 Hb_000258_150 Hb_000155_060--Hb_000258_150 Hb_019592_010 Hb_019592_010 Hb_000155_060--Hb_019592_010 Hb_000155_060--Hb_001001_050 Hb_022174_010 Hb_022174_010 Hb_000155_060--Hb_022174_010 Hb_000347_090 Hb_000347_090 Hb_011903_010--Hb_000347_090 Hb_188411_010 Hb_188411_010 Hb_011903_010--Hb_188411_010 Hb_068347_010 Hb_068347_010 Hb_011903_010--Hb_068347_010 Hb_000663_030 Hb_000663_030 Hb_011903_010--Hb_000663_030 Hb_006502_100 Hb_006502_100 Hb_011903_010--Hb_006502_100 Hb_161023_010 Hb_161023_010 Hb_011903_010--Hb_161023_010 Hb_000122_120 Hb_000122_120 Hb_113084_010--Hb_000122_120 Hb_113084_010--Hb_000668_090 Hb_033546_020 Hb_033546_020 Hb_113084_010--Hb_033546_020 Hb_000035_280 Hb_000035_280 Hb_113084_010--Hb_000035_280 Hb_113084_010--Hb_001001_050 Hb_003098_010 Hb_003098_010 Hb_113084_010--Hb_003098_010 Hb_012606_010 Hb_012606_010 Hb_000016_050--Hb_012606_010 Hb_001391_050 Hb_001391_050 Hb_000016_050--Hb_001391_050 Hb_007925_010 Hb_007925_010 Hb_000016_050--Hb_007925_010 Hb_105959_010 Hb_105959_010 Hb_000016_050--Hb_105959_010 Hb_000375_140 Hb_000375_140 Hb_000016_050--Hb_000375_140 Hb_058620_060 Hb_058620_060 Hb_000016_050--Hb_058620_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8255 0.478651 3.66924 11.2801 0.991661 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.108481 3.95172

CAGE analysis