Hb_000964_130

Information

Type transcription factor
Description TF Family: C3H
Location Contig964: 113428-115677
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27370g
description POPTRDRAFT_1068439; hypothetical protein
nr
ID XP_012065564.1
description PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
swissprot
ID P93755
description Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2
trembl
ID A0A067L895
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16760 PE=4 SV=1
Gene Ontology
ID GO:0016740
description zinc finger ccch domain-containing protein 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63859: 112828-117251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000964_130 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
2 Hb_000808_030 0.080594048 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
3 Hb_001999_090 0.0816035087 - - PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic [Jatropha curcas]
4 Hb_000866_120 0.0820819449 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
5 Hb_003747_100 0.0853887764 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
6 Hb_000017_220 0.0877933853 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
7 Hb_002007_160 0.0882486518 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
8 Hb_002307_270 0.0896961923 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
9 Hb_007441_220 0.0900728408 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
10 Hb_000836_380 0.0907747972 - - PREDICTED: C-terminal binding protein AN-like [Populus euphratica]
11 Hb_000025_790 0.091024656 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
12 Hb_012490_080 0.0919961386 - - threonine synthase, putative [Ricinus communis]
13 Hb_000107_490 0.0938906273 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
14 Hb_006718_020 0.0939072074 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
15 Hb_001635_120 0.0943895579 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
16 Hb_000270_670 0.0944172958 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
17 Hb_003371_090 0.0946334582 - - PREDICTED: uncharacterized protein LOC105650336 [Jatropha curcas]
18 Hb_000172_110 0.0950412807 - - -
19 Hb_005736_020 0.0950900766 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
20 Hb_010222_070 0.0958194759 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000964_130 Hb_000964_130 Hb_000808_030 Hb_000808_030 Hb_000964_130--Hb_000808_030 Hb_001999_090 Hb_001999_090 Hb_000964_130--Hb_001999_090 Hb_000866_120 Hb_000866_120 Hb_000964_130--Hb_000866_120 Hb_003747_100 Hb_003747_100 Hb_000964_130--Hb_003747_100 Hb_000017_220 Hb_000017_220 Hb_000964_130--Hb_000017_220 Hb_002007_160 Hb_002007_160 Hb_000964_130--Hb_002007_160 Hb_000808_030--Hb_003747_100 Hb_000120_130 Hb_000120_130 Hb_000808_030--Hb_000120_130 Hb_001004_060 Hb_001004_060 Hb_000808_030--Hb_001004_060 Hb_011671_410 Hb_011671_410 Hb_000808_030--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000808_030--Hb_001999_290 Hb_002235_040 Hb_002235_040 Hb_001999_090--Hb_002235_040 Hb_004712_130 Hb_004712_130 Hb_001999_090--Hb_004712_130 Hb_006718_020 Hb_006718_020 Hb_001999_090--Hb_006718_020 Hb_007441_220 Hb_007441_220 Hb_001999_090--Hb_007441_220 Hb_002316_160 Hb_002316_160 Hb_001999_090--Hb_002316_160 Hb_027472_070 Hb_027472_070 Hb_001999_090--Hb_027472_070 Hb_000866_120--Hb_002007_160 Hb_000172_110 Hb_000172_110 Hb_000866_120--Hb_000172_110 Hb_000270_670 Hb_000270_670 Hb_000866_120--Hb_000270_670 Hb_002316_150 Hb_002316_150 Hb_000866_120--Hb_002316_150 Hb_002798_070 Hb_002798_070 Hb_000866_120--Hb_002798_070 Hb_000890_050 Hb_000890_050 Hb_000866_120--Hb_000890_050 Hb_000331_680 Hb_000331_680 Hb_003747_100--Hb_000331_680 Hb_003747_100--Hb_000120_130 Hb_000077_140 Hb_000077_140 Hb_003747_100--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_003747_100--Hb_003504_030 Hb_000028_130 Hb_000028_130 Hb_000017_220--Hb_000028_130 Hb_001635_120 Hb_001635_120 Hb_000017_220--Hb_001635_120 Hb_000025_280 Hb_000025_280 Hb_000017_220--Hb_000025_280 Hb_001473_110 Hb_001473_110 Hb_000017_220--Hb_001473_110 Hb_004705_020 Hb_004705_020 Hb_000017_220--Hb_004705_020 Hb_001488_180 Hb_001488_180 Hb_000017_220--Hb_001488_180 Hb_000599_190 Hb_000599_190 Hb_002007_160--Hb_000599_190 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002007_160--Hb_002798_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7196 44.986 13.0663 24.2071 15.3121 21.3652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.7084 23.565 39.6284 29.0321 35.8106

CAGE analysis