Hb_000965_010

Information

Type -
Description -
Location Contig965: 10815-14657
Sequence    

Annotation

kegg
ID pda:103699060
description uncharacterized LOC103699060
nr
ID CAN71056.1
description hypothetical protein VITISV_016917 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5CAD1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016917 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000965_010 0.0 - - hypothetical protein VITISV_016917 [Vitis vinifera]
2 Hb_000685_090 0.1498525651 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
3 Hb_000495_060 0.179751126 - - Osmotin precursor, putative [Ricinus communis]
4 Hb_022793_010 0.1893289166 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
5 Hb_001596_010 0.2452291097 - - hypothetical protein POPTR_0001s181102g, partial [Populus trichocarpa]
6 Hb_187024_090 0.2493725761 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000060_070 0.2503076888 - - hypothetical protein EUTSA_v10023188mg, partial [Eutrema salsugineum]
8 Hb_162086_010 0.2541681878 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
9 Hb_101624_010 0.2564012168 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_005031_010 0.256415623 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_033095_050 0.2582731053 - - hypothetical protein VITISV_038692 [Vitis vinifera]
12 Hb_002800_020 0.2592158614 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_166631_010 0.2778490292 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
14 Hb_005542_170 0.2822225013 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_002000_120 0.2892579471 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_008008_020 0.2936521823 - - -
17 Hb_003645_050 0.2972404622 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_025528_010 0.2986879002 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
19 Hb_093824_010 0.3040571864 - - PREDICTED: uncharacterized protein LOC103326132 [Prunus mume]
20 Hb_012717_030 0.3045755466 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_000965_010 Hb_000965_010 Hb_000685_090 Hb_000685_090 Hb_000965_010--Hb_000685_090 Hb_000495_060 Hb_000495_060 Hb_000965_010--Hb_000495_060 Hb_022793_010 Hb_022793_010 Hb_000965_010--Hb_022793_010 Hb_001596_010 Hb_001596_010 Hb_000965_010--Hb_001596_010 Hb_187024_090 Hb_187024_090 Hb_000965_010--Hb_187024_090 Hb_000060_070 Hb_000060_070 Hb_000965_010--Hb_000060_070 Hb_000685_090--Hb_022793_010 Hb_000685_090--Hb_000495_060 Hb_000685_090--Hb_187024_090 Hb_000084_170 Hb_000084_170 Hb_000685_090--Hb_000084_170 Hb_000395_210 Hb_000395_210 Hb_000685_090--Hb_000395_210 Hb_014967_010 Hb_014967_010 Hb_000495_060--Hb_014967_010 Hb_159404_010 Hb_159404_010 Hb_000495_060--Hb_159404_010 Hb_020400_010 Hb_020400_010 Hb_000495_060--Hb_020400_010 Hb_008755_020 Hb_008755_020 Hb_000495_060--Hb_008755_020 Hb_110782_010 Hb_110782_010 Hb_000495_060--Hb_110782_010 Hb_022793_010--Hb_000495_060 Hb_022793_010--Hb_187024_090 Hb_003645_050 Hb_003645_050 Hb_022793_010--Hb_003645_050 Hb_022793_010--Hb_000084_170 Hb_002800_020 Hb_002800_020 Hb_001596_010--Hb_002800_020 Hb_033095_050 Hb_033095_050 Hb_001596_010--Hb_033095_050 Hb_101624_010 Hb_101624_010 Hb_001596_010--Hb_101624_010 Hb_005031_010 Hb_005031_010 Hb_001596_010--Hb_005031_010 Hb_136092_010 Hb_136092_010 Hb_001596_010--Hb_136092_010 Hb_005542_170 Hb_005542_170 Hb_001596_010--Hb_005542_170 Hb_008008_020 Hb_008008_020 Hb_187024_090--Hb_008008_020 Hb_010691_010 Hb_010691_010 Hb_187024_090--Hb_010691_010 Hb_187024_090--Hb_000084_170 Hb_162086_010 Hb_162086_010 Hb_000060_070--Hb_162086_010 Hb_007575_010 Hb_007575_010 Hb_000060_070--Hb_007575_010 Hb_000031_200 Hb_000031_200 Hb_000060_070--Hb_000031_200 Hb_000060_070--Hb_003645_050 Hb_144838_010 Hb_144838_010 Hb_000060_070--Hb_144838_010 Hb_008918_030 Hb_008918_030 Hb_000060_070--Hb_008918_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00790211 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0171214 0 0.0136191 0.0362182

CAGE analysis