Hb_000965_020

Information

Type -
Description -
Location Contig965: 44631-46540
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000965_020 0.0 - - -
2 Hb_000878_170 0.1522725606 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like [Jatropha curcas]
3 Hb_001776_090 0.1545154748 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
4 Hb_001405_050 0.1550520018 - - PREDICTED: uncharacterized protein LOC100500641 [Glycine max]
5 Hb_002505_050 0.1689524648 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
6 Hb_000412_110 0.1692480251 - - Rop4 [Hevea brasiliensis]
7 Hb_092706_020 0.1699797677 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
8 Hb_001545_040 0.1706415819 - - PREDICTED: ras-related protein Rab7-like [Malus domestica]
9 Hb_003185_020 0.1736089303 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
10 Hb_000680_150 0.1750443375 - - PREDICTED: protein STU1-like [Jatropha curcas]
11 Hb_004204_070 0.1764424277 - - PREDICTED: 40S ribosomal protein S19-3 [Jatropha curcas]
12 Hb_007451_030 0.1781661029 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
13 Hb_003581_090 0.1818531562 - - PREDICTED: galactose oxidase [Jatropha curcas]
14 Hb_003752_110 0.1828133329 - - -
15 Hb_000042_300 0.1831788983 - - -
16 Hb_000023_230 0.1834382881 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
17 Hb_002681_040 0.1841135753 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
18 Hb_000418_180 0.185756776 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000521_150 0.1862139502 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
20 Hb_042202_010 0.1868850779 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]

Gene co-expression network

sample Hb_000965_020 Hb_000965_020 Hb_000878_170 Hb_000878_170 Hb_000965_020--Hb_000878_170 Hb_001776_090 Hb_001776_090 Hb_000965_020--Hb_001776_090 Hb_001405_050 Hb_001405_050 Hb_000965_020--Hb_001405_050 Hb_002505_050 Hb_002505_050 Hb_000965_020--Hb_002505_050 Hb_000412_110 Hb_000412_110 Hb_000965_020--Hb_000412_110 Hb_092706_020 Hb_092706_020 Hb_000965_020--Hb_092706_020 Hb_000008_320 Hb_000008_320 Hb_000878_170--Hb_000008_320 Hb_000798_030 Hb_000798_030 Hb_000878_170--Hb_000798_030 Hb_002529_100 Hb_002529_100 Hb_000878_170--Hb_002529_100 Hb_002447_030 Hb_002447_030 Hb_000878_170--Hb_002447_030 Hb_024650_020 Hb_024650_020 Hb_000878_170--Hb_024650_020 Hb_000684_090 Hb_000684_090 Hb_000878_170--Hb_000684_090 Hb_001776_090--Hb_001405_050 Hb_001545_040 Hb_001545_040 Hb_001776_090--Hb_001545_040 Hb_007154_020 Hb_007154_020 Hb_001776_090--Hb_007154_020 Hb_001828_090 Hb_001828_090 Hb_001776_090--Hb_001828_090 Hb_011381_060 Hb_011381_060 Hb_001776_090--Hb_011381_060 Hb_001379_060 Hb_001379_060 Hb_001776_090--Hb_001379_060 Hb_143766_090 Hb_143766_090 Hb_001405_050--Hb_143766_090 Hb_019962_030 Hb_019962_030 Hb_001405_050--Hb_019962_030 Hb_002681_040 Hb_002681_040 Hb_001405_050--Hb_002681_040 Hb_004204_070 Hb_004204_070 Hb_001405_050--Hb_004204_070 Hb_000538_020 Hb_000538_020 Hb_001405_050--Hb_000538_020 Hb_002505_050--Hb_092706_020 Hb_003747_030 Hb_003747_030 Hb_002505_050--Hb_003747_030 Hb_000521_150 Hb_000521_150 Hb_002505_050--Hb_000521_150 Hb_143629_220 Hb_143629_220 Hb_002505_050--Hb_143629_220 Hb_003581_090 Hb_003581_090 Hb_002505_050--Hb_003581_090 Hb_000676_220 Hb_000676_220 Hb_000412_110--Hb_000676_220 Hb_000418_180 Hb_000418_180 Hb_000412_110--Hb_000418_180 Hb_023386_080 Hb_023386_080 Hb_000412_110--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000412_110--Hb_000329_040 Hb_000041_080 Hb_000041_080 Hb_000412_110--Hb_000041_080 Hb_000412_110--Hb_002529_100 Hb_092706_020--Hb_003581_090 Hb_002291_030 Hb_002291_030 Hb_092706_020--Hb_002291_030 Hb_002928_110 Hb_002928_110 Hb_092706_020--Hb_002928_110 Hb_092706_020--Hb_000521_150 Hb_000085_200 Hb_000085_200 Hb_092706_020--Hb_000085_200 Hb_000926_290 Hb_000926_290 Hb_092706_020--Hb_000926_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25139 1.1309 1.82076 0.121274 2.52904 1.78395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68733 4.41328 2.4766 0.233636 0

CAGE analysis