Hb_000966_040

Information

Type -
Description -
Location Contig966: 78406-103426
Sequence    

Annotation

kegg
ID vvi:100255619
description presequence protease 2, chloroplastic/mitochondrial-like
nr
ID KDP42318.1
description hypothetical protein JCGZ_01642 [Jatropha curcas]
swissprot
ID Q9LJL3
description Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2
trembl
ID A0A067L530
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01642 PE=3 SV=1
Gene Ontology
ID GO:0003824
description presequence protease chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63896: 78502-103290 , PASA_asmbl_63897: 102320-102773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000966_040 0.0 - - hypothetical protein JCGZ_01642 [Jatropha curcas]
2 Hb_000975_050 0.0688616625 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
3 Hb_004712_200 0.0976909081 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
4 Hb_000193_220 0.0979610755 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
5 Hb_010098_040 0.0991593179 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
6 Hb_004109_130 0.1089358212 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
7 Hb_000208_270 0.108973507 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
8 Hb_005332_150 0.1096442664 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
9 Hb_001266_160 0.1129761096 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
10 Hb_007982_040 0.1137105982 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
11 Hb_000359_160 0.113783856 - - PREDICTED: protein CAJ1 [Jatropha curcas]
12 Hb_002811_250 0.1212485228 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
13 Hb_000038_020 0.1226326581 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
14 Hb_005181_120 0.1230929576 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_002960_040 0.1238893433 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
16 Hb_010721_020 0.1245618544 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
17 Hb_000069_370 0.127950952 - - -
18 Hb_000803_170 0.1301011078 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
19 Hb_000317_180 0.1310124842 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
20 Hb_000359_070 0.1317974583 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000966_040 Hb_000966_040 Hb_000975_050 Hb_000975_050 Hb_000966_040--Hb_000975_050 Hb_004712_200 Hb_004712_200 Hb_000966_040--Hb_004712_200 Hb_000193_220 Hb_000193_220 Hb_000966_040--Hb_000193_220 Hb_010098_040 Hb_010098_040 Hb_000966_040--Hb_010098_040 Hb_004109_130 Hb_004109_130 Hb_000966_040--Hb_004109_130 Hb_000208_270 Hb_000208_270 Hb_000966_040--Hb_000208_270 Hb_000975_050--Hb_010098_040 Hb_000834_080 Hb_000834_080 Hb_000975_050--Hb_000834_080 Hb_000441_050 Hb_000441_050 Hb_000975_050--Hb_000441_050 Hb_005181_120 Hb_005181_120 Hb_000975_050--Hb_005181_120 Hb_005977_060 Hb_005977_060 Hb_000975_050--Hb_005977_060 Hb_001377_060 Hb_001377_060 Hb_004712_200--Hb_001377_060 Hb_004712_200--Hb_000975_050 Hb_001266_160 Hb_001266_160 Hb_004712_200--Hb_001266_160 Hb_009692_040 Hb_009692_040 Hb_004712_200--Hb_009692_040 Hb_004712_200--Hb_000193_220 Hb_010721_020 Hb_010721_020 Hb_000193_220--Hb_010721_020 Hb_002811_250 Hb_002811_250 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090 Hb_010098_040--Hb_005181_120 Hb_010098_040--Hb_002811_250 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_010098_040--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_010098_040--Hb_000679_080 Hb_000684_200 Hb_000684_200 Hb_010098_040--Hb_000684_200 Hb_005332_150 Hb_005332_150 Hb_004109_130--Hb_005332_150 Hb_020400_020 Hb_020400_020 Hb_004109_130--Hb_020400_020 Hb_065525_070 Hb_065525_070 Hb_004109_130--Hb_065525_070 Hb_000084_140 Hb_000084_140 Hb_004109_130--Hb_000084_140 Hb_004109_130--Hb_000208_270 Hb_020141_030 Hb_020141_030 Hb_000208_270--Hb_020141_030 Hb_000208_270--Hb_010098_040 Hb_000787_210 Hb_000787_210 Hb_000208_270--Hb_000787_210 Hb_000538_300 Hb_000538_300 Hb_000208_270--Hb_000538_300 Hb_002814_010 Hb_002814_010 Hb_000208_270--Hb_002814_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06579 19.1737 53.1902 34.7398 4.86554 6.5156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.79366 5.6498 7.39497 17.1295 164.864

CAGE analysis