Hb_000968_060

Information

Type -
Description -
Location Contig968: 129622-130783
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08000g
description POPTRDRAFT_1087569; hypothetical protein
nr
ID XP_012079002.1
description PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
swissprot
ID A6QPN6
description Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1
trembl
ID A0A067LLY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17387 PE=4 SV=1
Gene Ontology
ID GO:0005773
description gamma-interferon-inducible lysosomal thiol reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000968_060 0.0 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
2 Hb_002488_010 0.0754659984 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
3 Hb_002900_150 0.0881828228 - - PREDICTED: syntaxin-81 [Jatropha curcas]
4 Hb_000866_070 0.0952674748 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
5 Hb_000001_090 0.0991739813 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]
6 Hb_003849_160 0.0997035397 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
7 Hb_000032_410 0.1068368909 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
8 Hb_001411_130 0.1103841962 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
9 Hb_000915_130 0.1117523231 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
10 Hb_007594_080 0.1118215695 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
11 Hb_000260_490 0.1126003283 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
12 Hb_003849_120 0.1136460175 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
13 Hb_001439_210 0.1140109219 - - EXS family protein [Populus trichocarpa]
14 Hb_000649_330 0.1144649401 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
15 Hb_000042_110 0.1161105968 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
16 Hb_001328_050 0.1169118381 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
17 Hb_012762_060 0.1172776741 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
18 Hb_029584_120 0.1211012724 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
19 Hb_002942_230 0.1218070607 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
20 Hb_005357_110 0.121848573 - - hypothetical protein B456_002G083000 [Gossypium raimondii]

Gene co-expression network

sample Hb_000968_060 Hb_000968_060 Hb_002488_010 Hb_002488_010 Hb_000968_060--Hb_002488_010 Hb_002900_150 Hb_002900_150 Hb_000968_060--Hb_002900_150 Hb_000866_070 Hb_000866_070 Hb_000968_060--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000968_060--Hb_000001_090 Hb_003849_160 Hb_003849_160 Hb_000968_060--Hb_003849_160 Hb_000032_410 Hb_000032_410 Hb_000968_060--Hb_000032_410 Hb_000959_300 Hb_000959_300 Hb_002488_010--Hb_000959_300 Hb_002488_010--Hb_000866_070 Hb_012762_060 Hb_012762_060 Hb_002488_010--Hb_012762_060 Hb_003680_030 Hb_003680_030 Hb_002488_010--Hb_003680_030 Hb_002488_010--Hb_002900_150 Hb_002900_150--Hb_000866_070 Hb_005511_130 Hb_005511_130 Hb_002900_150--Hb_005511_130 Hb_004158_050 Hb_004158_050 Hb_002900_150--Hb_004158_050 Hb_005357_110 Hb_005357_110 Hb_002900_150--Hb_005357_110 Hb_000866_070--Hb_000001_090 Hb_002942_230 Hb_002942_230 Hb_000866_070--Hb_002942_230 Hb_029584_120 Hb_029584_120 Hb_000866_070--Hb_029584_120 Hb_001411_130 Hb_001411_130 Hb_000866_070--Hb_001411_130 Hb_002217_080 Hb_002217_080 Hb_000866_070--Hb_002217_080 Hb_000001_090--Hb_029584_120 Hb_006588_160 Hb_006588_160 Hb_000001_090--Hb_006588_160 Hb_000001_090--Hb_002942_230 Hb_003687_080 Hb_003687_080 Hb_000001_090--Hb_003687_080 Hb_074399_010 Hb_074399_010 Hb_000001_090--Hb_074399_010 Hb_029552_020 Hb_029552_020 Hb_003849_160--Hb_029552_020 Hb_000529_130 Hb_000529_130 Hb_003849_160--Hb_000529_130 Hb_001999_320 Hb_001999_320 Hb_003849_160--Hb_001999_320 Hb_002675_080 Hb_002675_080 Hb_003849_160--Hb_002675_080 Hb_009078_020 Hb_009078_020 Hb_003849_160--Hb_009078_020 Hb_000032_410--Hb_005357_110 Hb_000915_130 Hb_000915_130 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_000032_410--Hb_005511_130 Hb_029253_010 Hb_029253_010 Hb_000032_410--Hb_029253_010 Hb_004730_020 Hb_004730_020 Hb_000032_410--Hb_004730_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1052 65.4092 134.115 127.628 36.3785 31.7923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.56252 7.33697 13.7522 33.1929 77.4245

CAGE analysis