Hb_000971_060

Information

Type -
Description -
Location Contig971: 54802-60224
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000971_060 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000201_020 0.0020879318 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
3 Hb_001545_250 0.0024912287 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
4 Hb_001403_030 0.0048687864 - - -
5 Hb_010760_010 0.0114923162 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_070247_010 0.0172693172 - - hypothetical protein [Pseudomonas tolaasii]
7 Hb_020818_010 0.0188711352 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
8 Hb_000450_140 0.0213043125 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
9 Hb_012286_070 0.021403623 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
10 Hb_000572_050 0.0393454993 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
11 Hb_005841_030 0.0475864875 - - -
12 Hb_005142_010 0.0518767016 - - -
13 Hb_008839_030 0.0942335022 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004785_010 0.0979805371 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_000174_190 0.1020597846 - - unnamed protein product [Coffea canephora]
16 Hb_076908_010 0.1027766263 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_083493_050 0.1032936267 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
18 Hb_060455_010 0.1032975078 - - 50 kDa protein [Hevea brasiliensis]
19 Hb_149358_010 0.1046607281 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_001110_020 0.106884856 - - hypothetical protein JCGZ_03693 [Jatropha curcas]

Gene co-expression network

sample Hb_000971_060 Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_000971_060--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_000971_060--Hb_001545_250 Hb_001403_030 Hb_001403_030 Hb_000971_060--Hb_001403_030 Hb_010760_010 Hb_010760_010 Hb_000971_060--Hb_010760_010 Hb_070247_010 Hb_070247_010 Hb_000971_060--Hb_070247_010 Hb_020818_010 Hb_020818_010 Hb_000971_060--Hb_020818_010 Hb_000201_020--Hb_001545_250 Hb_000201_020--Hb_001403_030 Hb_000201_020--Hb_010760_010 Hb_000201_020--Hb_070247_010 Hb_000201_020--Hb_020818_010 Hb_001545_250--Hb_001403_030 Hb_001545_250--Hb_010760_010 Hb_001545_250--Hb_070247_010 Hb_001545_250--Hb_020818_010 Hb_001403_030--Hb_010760_010 Hb_001403_030--Hb_070247_010 Hb_001403_030--Hb_020818_010 Hb_010760_010--Hb_070247_010 Hb_010760_010--Hb_020818_010 Hb_000450_140 Hb_000450_140 Hb_010760_010--Hb_000450_140 Hb_012286_070 Hb_012286_070 Hb_010760_010--Hb_012286_070 Hb_070247_010--Hb_020818_010 Hb_070247_010--Hb_000450_140 Hb_070247_010--Hb_012286_070 Hb_020818_010--Hb_000450_140 Hb_020818_010--Hb_012286_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0305236 0.00314393 0

CAGE analysis