Hb_000975_040

Information

Type -
Description -
Location Contig975: 19491-21512
Sequence    

Annotation

kegg
ID cic:CICLE_v10028249mg
description hypothetical protein
nr
ID XP_006424800.1
description hypothetical protein CICLE_v10028249mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SGS2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028249mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63992: 19576-21606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_040 0.0 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]
2 Hb_000958_140 0.0342954346 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
3 Hb_014361_070 0.0479260154 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
4 Hb_001369_130 0.055617454 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
5 Hb_000696_230 0.0582570752 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
6 Hb_012395_140 0.0586708449 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
7 Hb_002835_230 0.0619821827 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_001379_110 0.0622803531 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
9 Hb_000484_030 0.0630222182 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
10 Hb_123903_010 0.0630263116 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
11 Hb_001047_220 0.0640448361 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
12 Hb_007576_110 0.0643136946 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
13 Hb_002375_010 0.0655859118 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
14 Hb_000441_120 0.0659963887 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_000011_100 0.0662993833 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
16 Hb_003680_150 0.0666028748 - - srpk, putative [Ricinus communis]
17 Hb_009175_020 0.0671770182 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
18 Hb_000347_070 0.0672476877 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000462_060 0.0679665944 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
20 Hb_001814_030 0.0683978916 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_040 Hb_000975_040 Hb_000958_140 Hb_000958_140 Hb_000975_040--Hb_000958_140 Hb_014361_070 Hb_014361_070 Hb_000975_040--Hb_014361_070 Hb_001369_130 Hb_001369_130 Hb_000975_040--Hb_001369_130 Hb_000696_230 Hb_000696_230 Hb_000975_040--Hb_000696_230 Hb_012395_140 Hb_012395_140 Hb_000975_040--Hb_012395_140 Hb_002835_230 Hb_002835_230 Hb_000975_040--Hb_002835_230 Hb_001047_220 Hb_001047_220 Hb_000958_140--Hb_001047_220 Hb_000958_140--Hb_001369_130 Hb_138596_010 Hb_138596_010 Hb_000958_140--Hb_138596_010 Hb_001409_020 Hb_001409_020 Hb_000958_140--Hb_001409_020 Hb_001379_110 Hb_001379_110 Hb_000958_140--Hb_001379_110 Hb_003371_110 Hb_003371_110 Hb_014361_070--Hb_003371_110 Hb_007576_110 Hb_007576_110 Hb_014361_070--Hb_007576_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_002823_030 Hb_002823_030 Hb_014361_070--Hb_002823_030 Hb_001195_320 Hb_001195_320 Hb_014361_070--Hb_001195_320 Hb_001369_130--Hb_012395_140 Hb_000462_060 Hb_000462_060 Hb_001369_130--Hb_000462_060 Hb_000789_250 Hb_000789_250 Hb_001369_130--Hb_000789_250 Hb_004267_040 Hb_004267_040 Hb_001369_130--Hb_004267_040 Hb_000484_030 Hb_000484_030 Hb_000696_230--Hb_000484_030 Hb_000441_120 Hb_000441_120 Hb_000696_230--Hb_000441_120 Hb_001408_040 Hb_001408_040 Hb_000696_230--Hb_001408_040 Hb_005867_070 Hb_005867_070 Hb_000696_230--Hb_005867_070 Hb_003464_090 Hb_003464_090 Hb_000696_230--Hb_003464_090 Hb_000395_070 Hb_000395_070 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_001814_030 Hb_001814_030 Hb_012395_140--Hb_001814_030 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002078_110 Hb_002078_110 Hb_002835_230--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_002835_230--Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_002835_230--Hb_002686_250 Hb_002835_230--Hb_002823_030 Hb_002835_230--Hb_014361_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8499 10.3149 8.34399 9.72051 13.017 10.5146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.50511 8.15449 8.80822 10.4236 9.30591

CAGE analysis