Hb_000975_060

Information

Type -
Description -
Location Contig975: 34744-36886
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_060 0.0 - - -
2 Hb_000248_020 0.0226653382 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
3 Hb_099878_040 0.0249080189 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
4 Hb_094694_010 0.0331366837 - - -
5 Hb_159124_010 0.0561539839 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
6 Hb_039547_010 0.0764788325 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_000916_010 0.0773806368 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
8 Hb_134377_070 0.0775895137 - - -
9 Hb_000142_090 0.0781522094 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
10 Hb_181013_010 0.0789669966 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
11 Hb_005432_020 0.0804552785 - - -
12 Hb_101034_010 0.0823142788 - - -
13 Hb_006120_160 0.0850138309 - - -
14 Hb_047923_030 0.0871112433 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
15 Hb_179183_010 0.1014619884 - - RALF-LIKE 32 family protein [Populus trichocarpa]
16 Hb_000209_010 0.1022640787 - - -
17 Hb_002576_010 0.1059006381 - - -
18 Hb_151411_010 0.1161844957 - - -
19 Hb_000192_060 0.1279245788 - - -
20 Hb_056506_080 0.129629702 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000975_060 Hb_000975_060 Hb_000248_020 Hb_000248_020 Hb_000975_060--Hb_000248_020 Hb_099878_040 Hb_099878_040 Hb_000975_060--Hb_099878_040 Hb_094694_010 Hb_094694_010 Hb_000975_060--Hb_094694_010 Hb_159124_010 Hb_159124_010 Hb_000975_060--Hb_159124_010 Hb_039547_010 Hb_039547_010 Hb_000975_060--Hb_039547_010 Hb_000916_010 Hb_000916_010 Hb_000975_060--Hb_000916_010 Hb_000248_020--Hb_094694_010 Hb_000248_020--Hb_099878_040 Hb_000248_020--Hb_039547_010 Hb_000248_020--Hb_000916_010 Hb_000248_020--Hb_159124_010 Hb_099878_040--Hb_094694_010 Hb_099878_040--Hb_159124_010 Hb_047923_030 Hb_047923_030 Hb_099878_040--Hb_047923_030 Hb_134377_070 Hb_134377_070 Hb_099878_040--Hb_134377_070 Hb_094694_010--Hb_039547_010 Hb_094694_010--Hb_000916_010 Hb_000209_010 Hb_000209_010 Hb_094694_010--Hb_000209_010 Hb_181013_010 Hb_181013_010 Hb_159124_010--Hb_181013_010 Hb_005432_020 Hb_005432_020 Hb_159124_010--Hb_005432_020 Hb_000142_090 Hb_000142_090 Hb_159124_010--Hb_000142_090 Hb_101034_010 Hb_101034_010 Hb_159124_010--Hb_101034_010 Hb_159124_010--Hb_134377_070 Hb_006120_160 Hb_006120_160 Hb_159124_010--Hb_006120_160 Hb_039547_010--Hb_000916_010 Hb_039547_010--Hb_000209_010 Hb_151411_010 Hb_151411_010 Hb_039547_010--Hb_151411_010 Hb_000192_060 Hb_000192_060 Hb_039547_010--Hb_000192_060 Hb_000916_010--Hb_000209_010 Hb_000916_010--Hb_151411_010 Hb_000916_010--Hb_000192_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0944232 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0412054 0.307772

CAGE analysis