Hb_000975_110

Information

Type -
Description -
Location Contig975: 70577-75933
Sequence    

Annotation

kegg
ID cmo:103497173
description ubiquitin-conjugating enzyme E2 7
nr
ID XP_012065011.1
description PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
swissprot
ID Q42540
description Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1
trembl
ID A0A067L759
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05684 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63999: 70671-75778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_110 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
2 Hb_000024_030 0.042651997 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
3 Hb_011161_050 0.0664040634 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
4 Hb_000722_040 0.0690344571 - - -
5 Hb_003561_030 0.0732061 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
6 Hb_001307_090 0.0766993933 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
7 Hb_001433_050 0.0778072541 - - 60S ribosomal protein L18, putative [Ricinus communis]
8 Hb_010812_010 0.0818579437 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
9 Hb_000364_020 0.0839861399 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
10 Hb_006816_530 0.0840758611 - - 60S ribosomal protein L18, putative [Ricinus communis]
11 Hb_007594_090 0.084838496 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
12 Hb_130291_010 0.0855729601 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
13 Hb_124755_010 0.0856844895 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
14 Hb_008511_110 0.0859454804 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
15 Hb_004336_050 0.0862511414 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
16 Hb_000751_130 0.0887163573 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
17 Hb_004032_100 0.0890891715 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
18 Hb_004374_140 0.0896927272 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
19 Hb_015175_030 0.0904936006 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
20 Hb_000364_030 0.0907722099 - - RNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000975_110 Hb_000975_110 Hb_000024_030 Hb_000024_030 Hb_000975_110--Hb_000024_030 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_001433_050 Hb_001433_050 Hb_000975_110--Hb_001433_050 Hb_000024_030--Hb_001433_050 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_011161_050--Hb_003561_030 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550 Hb_000722_040--Hb_003561_030 Hb_000224_090 Hb_000224_090 Hb_000722_040--Hb_000224_090 Hb_000722_040--Hb_000024_030 Hb_001427_230 Hb_001427_230 Hb_000722_040--Hb_001427_230 Hb_000722_040--Hb_011161_050 Hb_187083_010 Hb_187083_010 Hb_003561_030--Hb_187083_010 Hb_000367_210 Hb_000367_210 Hb_003561_030--Hb_000367_210 Hb_000272_070 Hb_000272_070 Hb_003561_030--Hb_000272_070 Hb_000122_020 Hb_000122_020 Hb_001307_090--Hb_000122_020 Hb_004336_050 Hb_004336_050 Hb_001307_090--Hb_004336_050 Hb_001307_090--Hb_124755_010 Hb_001307_090--Hb_000024_030 Hb_004449_200 Hb_004449_200 Hb_001307_090--Hb_004449_200 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.364 31.033 24.043 95.605 54.2237 153.486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
224.148 275.501 173.842 86.1699 31.883

CAGE analysis