Hb_000975_150

Information

Type -
Description -
Location Contig975: 88673-98309
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03400g
description POPTRDRAFT_650291; hypothetical protein
nr
ID XP_012065007.1
description PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LI22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05682 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_150 0.0 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
2 Hb_004800_170 0.1888978561 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
3 Hb_003096_050 0.193109352 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007894_250 0.1955460145 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
5 Hb_000056_330 0.2116098461 - - unnamed protein product [Vitis vinifera]
6 Hb_000390_260 0.2147126917 transcription factor TF Family: MYB Myb domain protein 107 [Theobroma cacao]
7 Hb_001190_060 0.2228699528 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
8 Hb_024621_030 0.2260224604 - - tetraketide alpha-pyrone reductase 2 [Jatropha curcas]
9 Hb_002918_230 0.226851929 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
10 Hb_002233_040 0.2309604788 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
11 Hb_000011_430 0.2433959083 - - zinc finger protein, putative [Ricinus communis]
12 Hb_002006_140 0.2469192336 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
13 Hb_000140_160 0.2530934587 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
14 Hb_003636_070 0.2558302996 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007439_010 0.2650869887 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
16 Hb_000926_130 0.2690951278 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_003992_250 0.2727919625 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2-like [Glycine max]
18 Hb_000816_120 0.2761790208 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
19 Hb_000675_060 0.2807094259 - - cytochrome P450, putative [Ricinus communis]
20 Hb_002311_240 0.2843323235 - - hypothetical protein JCGZ_18937 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_150 Hb_000975_150 Hb_004800_170 Hb_004800_170 Hb_000975_150--Hb_004800_170 Hb_003096_050 Hb_003096_050 Hb_000975_150--Hb_003096_050 Hb_007894_250 Hb_007894_250 Hb_000975_150--Hb_007894_250 Hb_000056_330 Hb_000056_330 Hb_000975_150--Hb_000056_330 Hb_000390_260 Hb_000390_260 Hb_000975_150--Hb_000390_260 Hb_001190_060 Hb_001190_060 Hb_000975_150--Hb_001190_060 Hb_002918_230 Hb_002918_230 Hb_004800_170--Hb_002918_230 Hb_000879_190 Hb_000879_190 Hb_004800_170--Hb_000879_190 Hb_024621_030 Hb_024621_030 Hb_004800_170--Hb_024621_030 Hb_002006_140 Hb_002006_140 Hb_004800_170--Hb_002006_140 Hb_004800_170--Hb_000056_330 Hb_003096_050--Hb_001190_060 Hb_003096_050--Hb_000056_330 Hb_003096_050--Hb_007894_250 Hb_000816_120 Hb_000816_120 Hb_003096_050--Hb_000816_120 Hb_002311_240 Hb_002311_240 Hb_003096_050--Hb_002311_240 Hb_007894_250--Hb_000056_330 Hb_000926_130 Hb_000926_130 Hb_007894_250--Hb_000926_130 Hb_007894_250--Hb_001190_060 Hb_007072_020 Hb_007072_020 Hb_007894_250--Hb_007072_020 Hb_000056_330--Hb_000926_130 Hb_000056_330--Hb_001190_060 Hb_000056_330--Hb_007072_020 Hb_000390_260--Hb_024621_030 Hb_003992_250 Hb_003992_250 Hb_000390_260--Hb_003992_250 Hb_004195_180 Hb_004195_180 Hb_000390_260--Hb_004195_180 Hb_000390_260--Hb_002006_140 Hb_027472_230 Hb_027472_230 Hb_000390_260--Hb_027472_230 Hb_001190_060--Hb_000816_120 Hb_001190_060--Hb_003992_250 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_001190_060--Hb_002311_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.045788 0.00979478 0.00962992 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209904 0.283097 0.0443823 1.19536 0.049426

CAGE analysis