Hb_000975_210

Information

Type -
Description -
Location Contig975: 160421-165292
Sequence    

Annotation

kegg
ID pvu:PHAVU_005G142200g
description hypothetical protein
nr
ID XP_012064998.1
description PREDICTED: THO complex subunit 4A [Jatropha curcas]
swissprot
ID Q8L773
description THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1
trembl
ID A0A067LAK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05675 PE=4 SV=1
Gene Ontology
ID GO:0000166
description tho complex subunit 4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64010: 161170-165213 , PASA_asmbl_64011: 161397-165213
cDNA
(Sanger)
(ID:Location)		 031_G03.ab1: 162097-165213

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_210 0.0 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
2 Hb_004324_360 0.0601334681 - - PREDICTED: uncharacterized protein LOC105650600 isoform X1 [Jatropha curcas]
3 Hb_000445_060 0.0663222624 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
4 Hb_000868_120 0.0711682914 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
5 Hb_000476_060 0.0722767419 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]
6 Hb_033642_120 0.0734191683 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
7 Hb_004774_090 0.0738668148 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
8 Hb_000207_200 0.0740673924 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
9 Hb_087313_010 0.0752827096 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000510_360 0.0764527101 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
11 Hb_000085_170 0.0765595282 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
12 Hb_000282_090 0.0768837927 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_000788_030 0.0773899539 - - PREDICTED: dynamin-2A [Jatropha curcas]
14 Hb_000254_100 0.079033109 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
15 Hb_000996_020 0.0790664717 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
16 Hb_001703_040 0.0800593426 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
17 Hb_002716_060 0.0803948648 - - carboxylesterase np, putative [Ricinus communis]
18 Hb_023344_140 0.0808560098 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
19 Hb_006846_170 0.0817572246 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
20 Hb_000103_340 0.082248073 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_210 Hb_000975_210 Hb_004324_360 Hb_004324_360 Hb_000975_210--Hb_004324_360 Hb_000445_060 Hb_000445_060 Hb_000975_210--Hb_000445_060 Hb_000868_120 Hb_000868_120 Hb_000975_210--Hb_000868_120 Hb_000476_060 Hb_000476_060 Hb_000975_210--Hb_000476_060 Hb_033642_120 Hb_033642_120 Hb_000975_210--Hb_033642_120 Hb_004774_090 Hb_004774_090 Hb_000975_210--Hb_004774_090 Hb_002684_020 Hb_002684_020 Hb_004324_360--Hb_002684_020 Hb_000788_030 Hb_000788_030 Hb_004324_360--Hb_000788_030 Hb_001488_020 Hb_001488_020 Hb_004324_360--Hb_001488_020 Hb_004324_360--Hb_000476_060 Hb_033312_040 Hb_033312_040 Hb_004324_360--Hb_033312_040 Hb_000996_020 Hb_000996_020 Hb_000445_060--Hb_000996_020 Hb_000445_060--Hb_000868_120 Hb_000110_350 Hb_000110_350 Hb_000445_060--Hb_000110_350 Hb_002768_050 Hb_002768_050 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000373_170 Hb_000373_170 Hb_000445_060--Hb_000373_170 Hb_010287_020 Hb_010287_020 Hb_000868_120--Hb_010287_020 Hb_000868_120--Hb_033642_120 Hb_000676_330 Hb_000676_330 Hb_000868_120--Hb_000676_330 Hb_001439_220 Hb_001439_220 Hb_000868_120--Hb_001439_220 Hb_000868_120--Hb_000661_120 Hb_003098_070 Hb_003098_070 Hb_000476_060--Hb_003098_070 Hb_089839_010 Hb_089839_010 Hb_000476_060--Hb_089839_010 Hb_001635_110 Hb_001635_110 Hb_000476_060--Hb_001635_110 Hb_000476_060--Hb_000788_030 Hb_000120_890 Hb_000120_890 Hb_000476_060--Hb_000120_890 Hb_003470_040 Hb_003470_040 Hb_033642_120--Hb_003470_040 Hb_000207_200 Hb_000207_200 Hb_033642_120--Hb_000207_200 Hb_033642_120--Hb_001439_220 Hb_033642_120--Hb_000661_120 Hb_033642_120--Hb_010287_020 Hb_111552_010 Hb_111552_010 Hb_004774_090--Hb_111552_010 Hb_004774_090--Hb_004324_360 Hb_000956_040 Hb_000956_040 Hb_004774_090--Hb_000956_040 Hb_004774_090--Hb_000788_030 Hb_000137_010 Hb_000137_010 Hb_004774_090--Hb_000137_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8423 35.2414 49.5235 24.8683 19.9899 18.5529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9789 17.1744 20.2069 24.273 36.423

CAGE analysis