Hb_000975_250

Information

Type -
Description -
Location Contig975: 221088-223883
Sequence    

Annotation

kegg
ID sly:101263896
description glycine-rich RNA-binding protein 4, mitochondrial-like
nr
ID XP_012064991.1
description PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9SVM8
description Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=RBG2 PE=1 SV=1
trembl
ID A0A067L730
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05669 PE=4 SV=1
Gene Ontology
ID GO:0005768
description glycine-rich rna-binding protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64021: 221381-223795 , PASA_asmbl_64022: 221751-223845
cDNA
(Sanger)
(ID:Location)		 044_N13.ab1: 221751-223845

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_250 0.0 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
2 Hb_001080_080 0.1085643781 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
3 Hb_003607_170 0.1110195479 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
4 Hb_126216_010 0.1122986894 - - PREDICTED: 60S ribosomal protein L9 [Jatropha curcas]
5 Hb_000948_190 0.1153676838 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
6 Hb_000617_090 0.1157519372 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
7 Hb_144598_020 0.1157847077 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
8 Hb_005496_030 0.1161660578 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
9 Hb_001133_020 0.1161820501 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
10 Hb_000948_210 0.1167976746 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
11 Hb_001247_350 0.1172775263 - - PREDICTED: anaphase-promoting complex subunit 11 [Jatropha curcas]
12 Hb_001314_100 0.1224953029 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
13 Hb_007432_080 0.1246149998 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
14 Hb_001638_260 0.1249069502 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
15 Hb_003226_210 0.1271879426 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
16 Hb_007416_020 0.1274607411 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
17 Hb_033153_090 0.127912813 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
18 Hb_032202_090 0.1283235065 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
19 Hb_003988_040 0.128449445 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
20 Hb_000545_150 0.131584805 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]

Gene co-expression network

sample Hb_000975_250 Hb_000975_250 Hb_001080_080 Hb_001080_080 Hb_000975_250--Hb_001080_080 Hb_003607_170 Hb_003607_170 Hb_000975_250--Hb_003607_170 Hb_126216_010 Hb_126216_010 Hb_000975_250--Hb_126216_010 Hb_000948_190 Hb_000948_190 Hb_000975_250--Hb_000948_190 Hb_000617_090 Hb_000617_090 Hb_000975_250--Hb_000617_090 Hb_144598_020 Hb_144598_020 Hb_000975_250--Hb_144598_020 Hb_001080_080--Hb_144598_020 Hb_000221_150 Hb_000221_150 Hb_001080_080--Hb_000221_150 Hb_007416_020 Hb_007416_020 Hb_001080_080--Hb_007416_020 Hb_000028_400 Hb_000028_400 Hb_001080_080--Hb_000028_400 Hb_001045_080 Hb_001045_080 Hb_001080_080--Hb_001045_080 Hb_029584_060 Hb_029584_060 Hb_001080_080--Hb_029584_060 Hb_003988_040 Hb_003988_040 Hb_003607_170--Hb_003988_040 Hb_003607_170--Hb_000617_090 Hb_008847_020 Hb_008847_020 Hb_003607_170--Hb_008847_020 Hb_010883_150 Hb_010883_150 Hb_003607_170--Hb_010883_150 Hb_000526_150 Hb_000526_150 Hb_003607_170--Hb_000526_150 Hb_005463_060 Hb_005463_060 Hb_003607_170--Hb_005463_060 Hb_001951_270 Hb_001951_270 Hb_126216_010--Hb_001951_270 Hb_009659_010 Hb_009659_010 Hb_126216_010--Hb_009659_010 Hb_000565_030 Hb_000565_030 Hb_126216_010--Hb_000565_030 Hb_000045_250 Hb_000045_250 Hb_126216_010--Hb_000045_250 Hb_012251_010 Hb_012251_010 Hb_126216_010--Hb_012251_010 Hb_001247_350 Hb_001247_350 Hb_000948_190--Hb_001247_350 Hb_007432_080 Hb_007432_080 Hb_000948_190--Hb_007432_080 Hb_003919_010 Hb_003919_010 Hb_000948_190--Hb_003919_010 Hb_168054_010 Hb_168054_010 Hb_000948_190--Hb_168054_010 Hb_004502_020 Hb_004502_020 Hb_000948_190--Hb_004502_020 Hb_000312_090 Hb_000312_090 Hb_000617_090--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_001221_310 Hb_001221_310 Hb_000617_090--Hb_001221_310 Hb_003125_150 Hb_003125_150 Hb_000617_090--Hb_003125_150 Hb_144598_020--Hb_007416_020 Hb_002431_050 Hb_002431_050 Hb_144598_020--Hb_002431_050 Hb_002234_070 Hb_002234_070 Hb_144598_020--Hb_002234_070 Hb_010672_060 Hb_010672_060 Hb_144598_020--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_144598_020--Hb_000029_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7783 3.54587 7.7958 11.986 4.20377 21.8922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.5878 40.8675 12.1249 3.61929 3.61032

CAGE analysis