Hb_000975_270

Information

Type -
Description -
Location Contig975: 240561-241004
Sequence    

Annotation

kegg
ID pda:103722134
description histone H2B.11-like
nr
ID XP_008810801.1
description PREDICTED: histone H2B.11-like [Phoenix dactylifera]
swissprot
ID Q943L2
description Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1
trembl
ID A0A087H880
description Histone H2B OS=Arabis alpina GN=AALP_AA3G100500 PE=3 SV=1
Gene Ontology
ID GO:0000786
description core histone h2a h2b h3 h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_270 0.0 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
2 Hb_032974_010 0.1542210402 - - -
3 Hb_005714_050 0.1823729484 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
4 Hb_186158_010 0.1902933386 - - conserved hypothetical protein [Ricinus communis]
5 Hb_011224_040 0.2078183118 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
6 Hb_000046_200 0.2169890483 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
7 Hb_069022_010 0.218629421 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000500_210 0.2201969229 - - -
9 Hb_109578_010 0.2268200838 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001017_080 0.2272568484 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
11 Hb_084889_010 0.2365779692 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
12 Hb_000275_010 0.2405319629 - - -
13 Hb_005199_010 0.2419644874 - - conserved hypothetical protein [Ricinus communis]
14 Hb_156503_040 0.2499264347 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
15 Hb_000025_440 0.2501296955 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
16 Hb_182005_010 0.2583039008 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
17 Hb_001488_400 0.2585174835 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
18 Hb_001754_140 0.2592592572 - - PREDICTED: uncharacterized protein LOC105643419 [Jatropha curcas]
19 Hb_123763_010 0.2622631303 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
20 Hb_021906_010 0.2643654991 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]

Gene co-expression network

sample Hb_000975_270 Hb_000975_270 Hb_032974_010 Hb_032974_010 Hb_000975_270--Hb_032974_010 Hb_005714_050 Hb_005714_050 Hb_000975_270--Hb_005714_050 Hb_186158_010 Hb_186158_010 Hb_000975_270--Hb_186158_010 Hb_011224_040 Hb_011224_040 Hb_000975_270--Hb_011224_040 Hb_000046_200 Hb_000046_200 Hb_000975_270--Hb_000046_200 Hb_069022_010 Hb_069022_010 Hb_000975_270--Hb_069022_010 Hb_032974_010--Hb_005714_050 Hb_032974_010--Hb_069022_010 Hb_084889_010 Hb_084889_010 Hb_032974_010--Hb_084889_010 Hb_001017_080 Hb_001017_080 Hb_032974_010--Hb_001017_080 Hb_000111_230 Hb_000111_230 Hb_032974_010--Hb_000111_230 Hb_005714_050--Hb_069022_010 Hb_005714_050--Hb_000111_230 Hb_000025_440 Hb_000025_440 Hb_005714_050--Hb_000025_440 Hb_156503_040 Hb_156503_040 Hb_005714_050--Hb_156503_040 Hb_186158_010--Hb_000046_200 Hb_186158_010--Hb_032974_010 Hb_186158_010--Hb_011224_040 Hb_182005_010 Hb_182005_010 Hb_186158_010--Hb_182005_010 Hb_005199_010 Hb_005199_010 Hb_186158_010--Hb_005199_010 Hb_000500_210 Hb_000500_210 Hb_011224_040--Hb_000500_210 Hb_011224_040--Hb_000046_200 Hb_002526_020 Hb_002526_020 Hb_011224_040--Hb_002526_020 Hb_000434_020 Hb_000434_020 Hb_011224_040--Hb_000434_020 Hb_004429_110 Hb_004429_110 Hb_011224_040--Hb_004429_110 Hb_000915_100 Hb_000915_100 Hb_000046_200--Hb_000915_100 Hb_001842_120 Hb_001842_120 Hb_000046_200--Hb_001842_120 Hb_000046_200--Hb_000500_210 Hb_001425_110 Hb_001425_110 Hb_000046_200--Hb_001425_110 Hb_000445_190 Hb_000445_190 Hb_069022_010--Hb_000445_190 Hb_000099_230 Hb_000099_230 Hb_069022_010--Hb_000099_230 Hb_069022_010--Hb_000111_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15677 0.353214 1.85116 2.38636 0.685634 0.950812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0265 17.5585 0 0 0

CAGE analysis